comparison process_radtags_rename.sh @ 1:228d0cbc14f9 draft default tip

planemo upload for repository https://github.com/kaktus42/galaxytools/tree/master/tools/stacks commit b7d7874d721ed5ac647eecf630b46deaae1a68f2-dirty

0:af879fc0d734

#!/bin/bash

EXT=$1

mv output/process_radtags.log output/Report.log
mv output/*.discards output/Discards.${EXT}.discards
mkdir splits
mv output/sample_* splits
#ls -lah output splits
for i in splits/*.fq; do mv "$i" "${i/.fq}".${EXT}; done

1:228d0cbc14f9

#!/bin/bash

EXT=$1

mv output/*.discards output/discards.discards
mkdir splits
mv output/sample_* splits
#ls -lah output splits
for i in splits/*.fq; do mv "$i" "${i/.fq}".${EXT}; done