Mercurial > repos > bgruening > agat
diff test-data/test01_stats.txt @ 0:f7c0a0030254 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 0851e9e6d46223a8233c56f3b0bcf14e19d63916
| author | bgruening |
|---|---|
| date | Tue, 23 May 2023 13:43:07 +0000 |
| parents | |
| children | e009d8260be2 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test01_stats.txt Tue May 23 13:43:07 2023 +0000 @@ -0,0 +1,80 @@ +-------------------------------------------------------------------------------- + +Compute transcript with isoforms if any + +Number of gene 379 +Number of transcript 379 +Number of cds 376 +Number of exon 379 +Number of exon in cds 376 +Number gene overlapping 62 +Number of single exon gene 379 +Number of single exon transcript 379 +mean transcripts per gene 1.0 +mean cdss per transcript 1.0 +mean exons per transcript 1.0 +mean exons per cds 1.0 +Total gene length 342644 +Total transcript length 342644 +Total cds length 342338 +Total exon length 342644 +mean gene length 904 +mean transcript length 904 +mean cds length 910 +mean exon length 904 +mean cds piece length 910 +% of genome covered by gene 33.1 +% of genome covered by transcript 33.1 +% of genome covered by cds 33.1 +% of genome covered by exon 33.1 +Longest gene 9499 +Longest transcript 9499 +Longest cds 9499 +Longest exon 9499 +Longest cds piece 9499 +Shortest gene 54 +Shortest transcript 54 +Shortest cds 54 +Shortest exon 54 +Shortest cds piece 54 + +Re-compute transcript without isoforms asked. We remove shortest isoforms if any + +Number of gene 379 +Number of transcript 379 +Number of cds 376 +Number of exon 379 +Number of exon in cds 376 +Number gene overlapping 62 +Number of single exon gene 379 +Number of single exon transcript 379 +mean transcripts per gene 1.0 +mean cdss per transcript 1.0 +mean exons per transcript 1.0 +mean exons per cds 1.0 +Total gene length 342644 +Total transcript length 342644 +Total cds length 342338 +Total exon length 342644 +mean gene length 904 +mean transcript length 904 +mean cds length 910 +mean exon length 904 +mean cds piece length 910 +% of genome covered by gene 33.1 +% of genome covered by transcript 33.1 +% of genome covered by cds 33.1 +% of genome covered by exon 33.1 +Longest gene 9499 +Longest transcript 9499 +Longest cds 9499 +Longest exon 9499 +Longest cds piece 9499 +Shortest gene 54 +Shortest transcript 54 +Shortest cds 54 +Shortest exon 54 +Shortest cds piece 54 + +-------------------------------------------------------------------------------- +