Mercurial > repos > bgruening > agat
view test-data/test09.txt @ 1:6d8444408ff1 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 7339e1e32188846188c6b18a024dac0ee0ff4d88
| author | bgruening |
|---|---|
| date | Tue, 23 May 2023 18:05:26 +0000 |
| parents | f7c0a0030254 |
| children | e009d8260be2 |
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-------------------------------------------------------------------------------- Compute transcript with isoforms if any Number of gene 10 Number of transcript 10 Number of cds 10 Number of exon 10 Number of exon in cds 10 Number gene overlapping 4 Number of single exon gene 10 Number of single exon transcript 10 mean transcripts per gene 1.0 mean cdss per transcript 1.0 mean exons per transcript 1.0 mean exons per cds 1.0 Total gene length 9795 Total transcript length 9795 Total cds length 9795 Total exon length 9795 mean gene length 979 mean transcript length 979 mean cds length 979 mean exon length 979 mean cds piece length 979 % of genome covered by gene 0.9 % of genome covered by transcript 0.9 % of genome covered by cds 0.9 % of genome covered by exon 0.9 Longest gene 2415 Longest transcript 2415 Longest cds 2415 Longest exon 2415 Longest cds piece 2415 Shortest gene 399 Shortest transcript 399 Shortest cds 399 Shortest exon 399 Shortest cds piece 399 Re-compute transcript without isoforms asked. We remove shortest isoforms if any Number of gene 10 Number of transcript 10 Number of cds 10 Number of exon 10 Number of exon in cds 10 Number gene overlapping 4 Number of single exon gene 10 Number of single exon transcript 10 mean transcripts per gene 1.0 mean cdss per transcript 1.0 mean exons per transcript 1.0 mean exons per cds 1.0 Total gene length 9795 Total transcript length 9795 Total cds length 9795 Total exon length 9795 mean gene length 979 mean transcript length 979 mean cds length 979 mean exon length 979 mean cds piece length 979 % of genome covered by gene 0.9 % of genome covered by transcript 0.9 % of genome covered by cds 0.9 % of genome covered by exon 0.9 Longest gene 2415 Longest transcript 2415 Longest cds 2415 Longest exon 2415 Longest cds piece 2415 Shortest gene 399 Shortest transcript 399 Shortest cds 399 Shortest exon 399 Shortest cds piece 399 --------------------------------------------------------------------------------