Mercurial > repos > bgruening > agat
view test-data/test09.txt @ 0:f7c0a0030254 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 0851e9e6d46223a8233c56f3b0bcf14e19d63916
| author | bgruening |
|---|---|
| date | Tue, 23 May 2023 13:43:07 +0000 |
| parents | |
| children | e009d8260be2 |
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-------------------------------------------------------------------------------- Compute transcript with isoforms if any Number of gene 10 Number of transcript 10 Number of cds 10 Number of exon 10 Number of exon in cds 10 Number gene overlapping 4 Number of single exon gene 10 Number of single exon transcript 10 mean transcripts per gene 1.0 mean cdss per transcript 1.0 mean exons per transcript 1.0 mean exons per cds 1.0 Total gene length 9795 Total transcript length 9795 Total cds length 9795 Total exon length 9795 mean gene length 979 mean transcript length 979 mean cds length 979 mean exon length 979 mean cds piece length 979 % of genome covered by gene 0.9 % of genome covered by transcript 0.9 % of genome covered by cds 0.9 % of genome covered by exon 0.9 Longest gene 2415 Longest transcript 2415 Longest cds 2415 Longest exon 2415 Longest cds piece 2415 Shortest gene 399 Shortest transcript 399 Shortest cds 399 Shortest exon 399 Shortest cds piece 399 Re-compute transcript without isoforms asked. We remove shortest isoforms if any Number of gene 10 Number of transcript 10 Number of cds 10 Number of exon 10 Number of exon in cds 10 Number gene overlapping 4 Number of single exon gene 10 Number of single exon transcript 10 mean transcripts per gene 1.0 mean cdss per transcript 1.0 mean exons per transcript 1.0 mean exons per cds 1.0 Total gene length 9795 Total transcript length 9795 Total cds length 9795 Total exon length 9795 mean gene length 979 mean transcript length 979 mean cds length 979 mean exon length 979 mean cds piece length 979 % of genome covered by gene 0.9 % of genome covered by transcript 0.9 % of genome covered by cds 0.9 % of genome covered by exon 0.9 Longest gene 2415 Longest transcript 2415 Longest cds 2415 Longest exon 2415 Longest cds piece 2415 Shortest gene 399 Shortest transcript 399 Shortest cds 399 Shortest exon 399 Shortest cds piece 399 --------------------------------------------------------------------------------