Mercurial > repos > bgruening > agat
view test-data/test01_stats.txt @ 0:f7c0a0030254 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 0851e9e6d46223a8233c56f3b0bcf14e19d63916
| author | bgruening |
|---|---|
| date | Tue, 23 May 2023 13:43:07 +0000 |
| parents | |
| children | e009d8260be2 |
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-------------------------------------------------------------------------------- Compute transcript with isoforms if any Number of gene 379 Number of transcript 379 Number of cds 376 Number of exon 379 Number of exon in cds 376 Number gene overlapping 62 Number of single exon gene 379 Number of single exon transcript 379 mean transcripts per gene 1.0 mean cdss per transcript 1.0 mean exons per transcript 1.0 mean exons per cds 1.0 Total gene length 342644 Total transcript length 342644 Total cds length 342338 Total exon length 342644 mean gene length 904 mean transcript length 904 mean cds length 910 mean exon length 904 mean cds piece length 910 % of genome covered by gene 33.1 % of genome covered by transcript 33.1 % of genome covered by cds 33.1 % of genome covered by exon 33.1 Longest gene 9499 Longest transcript 9499 Longest cds 9499 Longest exon 9499 Longest cds piece 9499 Shortest gene 54 Shortest transcript 54 Shortest cds 54 Shortest exon 54 Shortest cds piece 54 Re-compute transcript without isoforms asked. We remove shortest isoforms if any Number of gene 379 Number of transcript 379 Number of cds 376 Number of exon 379 Number of exon in cds 376 Number gene overlapping 62 Number of single exon gene 379 Number of single exon transcript 379 mean transcripts per gene 1.0 mean cdss per transcript 1.0 mean exons per transcript 1.0 mean exons per cds 1.0 Total gene length 342644 Total transcript length 342644 Total cds length 342338 Total exon length 342644 mean gene length 904 mean transcript length 904 mean cds length 910 mean exon length 904 mean cds piece length 910 % of genome covered by gene 33.1 % of genome covered by transcript 33.1 % of genome covered by cds 33.1 % of genome covered by exon 33.1 Longest gene 9499 Longest transcript 9499 Longest cds 9499 Longest exon 9499 Longest cds piece 9499 Shortest gene 54 Shortest transcript 54 Shortest cds 54 Shortest exon 54 Shortest cds piece 54 --------------------------------------------------------------------------------