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view test-data/output_splitting_report.txt @ 10:7bffcb6fc81d draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/bismark commit 23685f742f0b5cd5de871c285d247d560485b11b
author bgruening
date Tue, 26 Feb 2019 18:42:28 -0500
parents 9bfe38410155
children f211753166bd
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dataset_11.dat

Parameters used to extract methylation information:
Bismark Extractor Version: v0.20.0
Bismark result file: single-end (SAM format)
Output specified: comprehensive


Processed 554 lines in total
Total number of methylation call strings processed: 554

Final Cytosine Methylation Report
=================================
Total number of C's analysed:	8563

Total methylated C's in CpG context:	245
Total methylated C's in CHG context:	51
Total methylated C's in CHH context:	114

Total C to T conversions in CpG context:	133
Total C to T conversions in CHG context:	1762
Total C to T conversions in CHH context:	6258

C methylated in CpG context:	64.8%
C methylated in CHG context:	2.8%
C methylated in CHH context:	1.8%