Mercurial > repos > bgruening > canu
changeset 2:c5b7390290b1 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/canu commit ecd77cd558a9b941fd0dfb71c4e534feba3ee7da
| author | bgruening |
|---|---|
| date | Sun, 26 May 2019 10:52:09 -0400 |
| parents | 58346ef3116b |
| children | 5732f959936a |
| files | canu.xml |
| diffstat | 1 files changed, 6 insertions(+), 8 deletions(-) [+] |
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--- a/canu.xml Sat Jun 09 13:46:56 2018 -0400 +++ b/canu.xml Sun May 26 10:52:09 2019 -0400 @@ -1,7 +1,7 @@ -<tool id="canu" name="Canu assembler" version="1.7"> +<tool id="canu" name="Canu assembler" version="1.8"> <description>Assembler optimized for long error-prone reads such as PacBio, Oxford Nanopore </description> <requirements> - <requirement type="package" version="1.7">canu</requirement> + <requirement type="package" version="1.8">canu</requirement> </requirements> <version_command>canu --version</version_command> <command detect_errors="exit_code"> @@ -41,20 +41,18 @@ ${contigFilter.lowCovDepth} ' genomeSize=$genomeSize - stopOnReadQuality=false minThreads=\${GALAXY_SLOTS:-4} maxThreads=\${GALAXY_SLOTS:-4} obtovlThreads=\${GALAXY_SLOTS:-4} utgovlThreads=\${GALAXY_SLOTS:-4} batThreads=\${GALAXY_SLOTS:-4} - batMemory=\${GALAXY_MEMORY_MB:-7} - cormhapMemory=\${GALAXY_MEMORY_MB:-7} - obtovlMemory=\${GALAXY_MEMORY_MB:-7} - utgovlMemory=\${GALAXY_MEMORY_MB:-7} + batMemory=\${GALAXY_MEMORY_MB:-4096}M + cormhapMemory=\${GALAXY_MEMORY_MB:-4096}M + obtovlMemory=\${GALAXY_MEMORY_MB:-4096}M + utgovlMemory=\${GALAXY_MEMORY_MB:-4096}M gfaThreads=\${GALAXY_SLOTS:-4} corThreads=\${GALAXY_SLOTS:-4} cnsThreads=\${GALAXY_SLOTS:-4} - gnuplotTested=true useGrid=false $mode #for $counter, $input in enumerate($inputs):