Mercurial > repos > bgruening > glimmer_gbk_to_orf

changeset 3:44dc09edd97b draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/glimmer commit a80e3e4aa3a40970af507bf9119cf7f1c2ffb336
author iuc
date Mon, 16 Dec 2024 14:42:47 +0000
parents 04861c9bbf45
children
files glimmer_gbk_to_orf.xml macros.xml
diffstat 2 files changed, 9 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/glimmer_gbk_to_orf.xml	Sun Mar 20 10:07:39 2022 +0000
+++ b/glimmer_gbk_to_orf.xml	Mon Dec 16 14:42:47 2024 +0000
@@ -1,9 +1,9 @@
-<tool id="glimmer_gbk_to_orf" name="Extract ORF" version="@WRAPPER_VERSION@">
+<tool id="glimmer_gbk_to_orf" name="Extract ORF" version="@WRAPPER_VERSION@" profile="@PROFILE_VERSION@">
     <description>from a GenBank file</description>
-    <expand macro="bio_tools"/>
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="bio_tools"/>
     <expand macro="requirements"/>
     <command><![CDATA[
         python '$__tool_directory__/glimmer_gbk_to_orf.py'
@@ -16,8 +16,8 @@
         <param name="infile" type='data' format="genbank" label="gene bank file"/>
     </inputs>
     <outputs>
-        <data name="aa_output" format="fasta" />
-        <data name="nc_output" format="fasta" />
+        <data name="aa_output" format="fasta" label="${tool.name} on ${on_string}: Amino acids"/>
+        <data name="nc_output" format="fasta" label="{tool.name} on ${on_string}: Nucleotides"/>
     </outputs>
     <tests>
         <test>
--- a/macros.xml	Sun Mar 20 10:07:39 2022 +0000
+++ b/macros.xml	Mon Dec 16 14:42:47 2024 +0000
@@ -1,8 +1,12 @@
 <?xml version="1.0"?>
 <macros>
+    <token name="@TOOL_VERSION@">3.02</token>
+    <token name="@VERSION_SUFFIX@">2</token>
+    <token name="@WRAPPER_VERSION@">@TOOL_VERSION@+galaxy@VERSION_SUFFIX@</token>
+    <token name="@PROFILE_VERSION@">23.1</token>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="3.02">glimmer</requirement>
+            <requirement type="package" version="@TOOL_VERSION@">glimmer</requirement>
             <requirement type="package" version="1.70">biopython</requirement>
             <yield/>
         </requirements>
@@ -12,7 +16,6 @@
             <xref type="bio.tools">gemini</xref>
         </xrefs>
     </xml>
-    <token name="@WRAPPER_VERSION@">3.02</token>
 
     <xml name="citation">
         <citations>