Mercurial > repos > bgruening > hicexplorer_hicdifferentialtad
annotate test-data/cHi-C/chicQualityControl/new_referencepoints.bed_report @ 2:77d8e0fd162a draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
author | iuc |
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date | Wed, 18 Oct 2023 11:06:49 +0000 |
parents | c852ad97ba28 |
children | 5dfba24d7bdd |
rev | line source |
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2
77d8e0fd162a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
iuc
parents:
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1 # Created with chicQualityControl version 3.7.2 |
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c852ad97ba28
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 55de003830db380639df997cdc5810df8022f63e"
bgruening
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2 # QC report for matrices: 0_matrix.cool 1_matrix.cool |
c852ad97ba28
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 55de003830db380639df997cdc5810df8022f63e"
bgruening
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3 #Sparsity threshold for rejection: sparsity <= 0.05 are rejected. |
c852ad97ba28
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 55de003830db380639df997cdc5810df8022f63e"
bgruening
parents:
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4 |
c852ad97ba28
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 55de003830db380639df997cdc5810df8022f63e"
bgruening
parents:
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5 Number of reference points: 43 |
c852ad97ba28
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 55de003830db380639df997cdc5810df8022f63e"
bgruening
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6 Number of accepted reference points: 35 |
c852ad97ba28
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 55de003830db380639df997cdc5810df8022f63e"
bgruening
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7 Number of rejected reference points: 8 |
c852ad97ba28
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 55de003830db380639df997cdc5810df8022f63e"
bgruening
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8 Number of faulty reference points: 0 |
c852ad97ba28
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 55de003830db380639df997cdc5810df8022f63e"
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9 |
c852ad97ba28
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 55de003830db380639df997cdc5810df8022f63e"
bgruening
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10 |
c852ad97ba28
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 55de003830db380639df997cdc5810df8022f63e"
bgruening
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11 A faulty reference point is caused by the non-presence of the chromosome in one of the given matrices. |
c852ad97ba28
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 55de003830db380639df997cdc5810df8022f63e"
bgruening
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12 It can also be caused by the non-presence of valid Hi-C reads in a region, especially at the chromosome ends. |
c852ad97ba28
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 55de003830db380639df997cdc5810df8022f63e"
bgruening
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13 Please check the results of hicInfo to validate this for your data. |