diff test-data/cmcalibrate_input.cm @ 5:6e18e0b098cd draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/infernal commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86
author bgruening
date Sat, 21 Jan 2017 17:36:57 -0500
parents
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cmcalibrate_input.cm	Sat Jan 21 17:36:57 2017 -0500
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+INFERNAL1/a [1.1.2 | July 2016]
+NAME     dataset_838
+STATES   233
+NODES    62
+CLEN     73
+W        90
+ALPH     RNA
+RF       no
+CONS     yes
+MAP      yes
+DATE     Thu Dec 15 13:43:26 2016
+COM      [1] cmbuild -F --fast --symfrac 0.5 --wpb --p7ere 0.38 --EmN 200 --EvN 200 --ElfN 200 --EgfN 200 --eent /home/wanli/galaxy/database/files/000/dataset_839.dat /home/wanli/galaxy/database/files/000/dataset_838.dat
+COM      [2] cmcalibrate Downloads/download.cm
+PBEGIN   0.05
+PEND     0.05
+WBETA    1e-07
+QDBBETA1 1e-07
+QDBBETA2 1e-15
+N2OMEGA  1.52588e-05
+N3OMEGA  1.52588e-05
+ELSELF   -0.08926734
+NSEQ     2
+EFFN     1.902344
+CKSUM    1256650105
+NULL     0.000  0.000  0.000  0.000 
+EFP7GF   -2.8151 0.73715
+ECMLC    0.80543    -3.96449     2.80237     1600000      279383  0.004295
+ECMGC    0.42297   -15.07779    -2.84171     1600000       70757  0.005653
+ECMLI    0.67085    -3.93573     3.92167     1600000      233559  0.005138
+ECMGI    0.43319   -10.87224     0.43591     1600000       53640  0.007457
+CM
+                                             [ ROOT    0 ]      -      - - - - -
+     S     0    -1 0     1     4     0     1    90   110  -6.854  -8.100  -0.081  -4.553                 
+    IL     1     1 2     1     4     3    27    91   111  -2.817  -4.319  -0.613  -2.698                  0.000  0.000  0.000  0.000 
+    IR     2     2 3     2     3     4    29    92   112  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
+                                             [ MATR    1 ]      -     74 - a - -
+    MR     3     2 3     5     5     5    30    90   110  -7.084  -0.039  -6.900  -7.112  -8.004          0.711 -1.386  0.490 -0.798 
+     D     4     2 3     5     5     1    23    88   109  -5.352  -0.707  -2.978  -4.409  -2.404         
+    IR     5     5 3     5     5     3    27    90   110  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP    2 ]      1     73 g c - -
+    MP     6     5 3    10     6     6    31    89   109  -9.103  -9.042  -0.021  -7.819  -8.099  -8.494 -3.271 -2.721 -3.286  0.880 -2.952 -4.020  1.406 -3.346 -3.336  2.423 -3.790 -0.527  1.874 -3.393 -0.601 -2.220 
+    ML     7     5 3    10     6     3    25    87   107  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR     8     5 3    10     6     3    25    87   107  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D     9     5 3    10     6     0    20    85   105  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL    10    10 5    10     6     3    26    88   109  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR    11    11 6    11     5     3    27    88   108  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP    3 ]      2     72 C G - -
+    MP    12    11 6    16     6     5    30    87   107  -9.103  -9.042  -0.021  -7.819  -8.099  -8.494 -4.534 -4.439 -4.227 -0.672 -2.948 -4.641  3.546 -3.756 -4.276 -0.430 -4.538 -2.386  0.568 -4.605 -0.654 -3.116 
+    ML    13    11 6    16     6     3    24    85   105  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR    14    11 6    16     6     2    24    85   105  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D    15    11 6    16     6     0    20    83   103  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL    16    16 5    16     6     3    26    86   107  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR    17    17 6    17     5     3    26    86   106  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP    4 ]      3     71 g c - -
+    MP    18    17 6    22     6     5    29    85   105  -9.103  -9.042  -0.021  -7.819  -8.099  -8.494 -3.399 -2.852 -3.384  0.778 -2.912 -4.071  2.215 -3.369 -3.430  2.395 -3.863 -0.655  0.991 -3.497 -0.541 -2.295 
+    ML    19    17 6    22     6     2    24    83   103  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR    20    17 6    22     6     2    24    83   103  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D    21    17 6    22     6     0    19    81   101  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL    22    22 5    22     6     3    25    84   105  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR    23    23 6    23     5     3    26    84   104  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP    5 ]      4     70 g c - -
+    MP    24    23 6    28     6     5    27    83   103  -9.103  -9.042  -0.021  -7.819  -8.099  -8.494 -3.685 -2.520 -3.739  0.996 -4.349 -4.510  0.110 -4.031 -3.653  2.956 -4.094  1.654 -0.173 -3.846 -1.845 -2.615 
+    ML    25    23 6    28     6     2    23    81   101  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR    26    23 6    28     6     2    23    81   101  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D    27    23 6    28     6     0    19    79    99  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL    28    28 5    28     6     3    25    82   103  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR    29    29 6    29     5     3    25    82   102  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP    6 ]      5     69 A U - -
+    MP    30    29 6    34     6     5    25    81   101  -9.103  -9.042  -0.021  -7.819  -8.099  -8.494 -3.778 -2.813 -3.798  3.323 -4.129 -5.190  0.170 -3.841 -3.690  1.093 -4.237 -0.291 -0.248 -4.380 -1.771 -2.632 
+    ML    31    29 6    34     6     2    22    79   100  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR    32    29 6    34     6     2    22    79    99  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D    33    29 6    34     6     0    19    77    97  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL    34    34 5    34     6     3    23    80   101  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR    35    35 6    35     5     3    23    80   100  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP    7 ]      6     68 U A - -
+    MP    36    35 6    40     6     5    23    79    99  -9.103  -9.042  -0.021  -7.819  -8.099  -8.494 -4.174 -3.998 -4.014 -0.294 -2.959 -4.580  1.369 -3.654 -4.019 -0.038 -4.393 -1.898  3.320 -4.326 -0.636 -2.845 
+    ML    37    35 6    40     6     2    21    78    98  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR    38    35 6    40     6     2    21    78    98  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D    39    35 6    40     6     0    18    76    96  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL    40    40 5    40     6     2    22    78    99  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR    41    41 6    41     5     2    22    78    98  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP    8 ]      7     67 u a - -
+    MP    42    41 6    46     4     3    21    77    97  -6.937  -7.144  -0.054  -5.558                 -3.032 -2.716 -3.091  1.906 -2.672 -3.917  1.568 -3.103 -3.103  1.300 -3.601 -0.598  2.047 -3.280 -0.404 -2.050 
+    ML    43    41 6    46     4     2    20    77    97  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
+    MR    44    41 6    46     4     1    19    76    97  -4.809  -3.838  -1.706  -0.766                  0.368 -0.385 -0.191  0.094 
+     D    45    41 6    46     4     0    18    75    96  -4.568  -4.250  -2.265  -0.520                 
+    IL    46    46 5    46     4     2    21    78    99  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
+    IR    47    47 6    47     3     2    21    77    98  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL    9 ]      8      - U - - -
+    ML    48    47 6    50     3     2    19    74    94  -7.954  -0.021  -6.608                         -1.467 -1.466 -2.199  1.613 
+     D    49    47 6    50     3     0    18    73    93  -6.174  -1.687  -0.566                         
+    IL    50    50 3    50     3     2    20    76    97  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   10 ]      9      - A - - -
+    ML    51    50 3    53     2     1    18    73    93  -8.344  -0.004                                  1.714 -2.351 -1.985 -1.891 
+     D    52    50 3    53     2     0    17    72    92  -8.445  -0.004                                 
+    IL    53    53 3    53     2     1    19    74    94  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
+                                             [ BIF    11 ]      -      - - - - -
+     B    54    53 3   124    55     0    17    72    92                                                 
+                                             [ BEGR   43 ]      -      - - - - -
+     S    55    54 1    56     3     0     0    36    55  -7.954  -0.021  -6.608                         
+    IL    56    56 2    56     3     1     1    40    59  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   44 ]     45      - A - - -
+    ML    57    56 2    59     3     1     1    36    55  -7.954  -0.021  -6.608                          1.714 -2.351 -1.985 -1.891 
+     D    58    56 2    59     3     0     0    35    54  -6.174  -1.687  -0.566                         
+    IL    59    59 3    59     3     1     1    39    58  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   45 ]     46      - G - - -
+    ML    60    59 3    62     3     1     1    35    54  -7.954  -0.021  -6.608                         -1.559 -2.775  1.719 -2.162 
+     D    61    59 3    62     3     0     0    34    53  -6.174  -1.687  -0.566                         
+    IL    62    62 3    62     3     1     1    37    57  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   46 ]     47      - a - - -
+    ML    63    62 3    65     3     1     1    34    53  -7.954  -0.445  -1.937                          0.698 -1.388  0.507 -0.799 
+     D    64    62 3    65     3     0     0    33    52  -6.174  -1.687  -0.566                         
+    IL    65    65 3    65     3     1     1    37    56  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   47 ]     48      - U - - -
+    ML    66    65 3    68     3     1     1    33    52  -7.537  -0.028  -6.191                         -0.748 -0.887 -1.429  1.318 
+     D    67    65 3    68     3     0     0    32    51  -7.898  -0.338  -2.290                         
+    IL    68    68 3    68     3     1     1    36    55  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   48 ]     49      - C - - -
+    ML    69    68 3    71     5     1     1    32    51  -7.084  -0.039  -6.900  -7.112  -8.004         -1.716  1.617 -2.539 -1.135 
+     D    70    68 3    71     5     0     0    31    50  -4.959  -0.803  -4.221  -2.596  -2.508         
+    IL    71    71 3    71     5     1     1    32    51  -2.408  -0.496  -4.087  -5.920  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   49 ]     50     66 C G - -
+    MP    72    71 3    76     6     2     2    31    50  -9.103  -9.042  -0.021  -7.819  -8.099  -8.494 -4.534 -4.439 -4.227 -0.672 -2.948 -4.641  3.546 -3.756 -4.276 -0.430 -4.538 -2.386  0.568 -4.605 -0.654 -3.116 
+    ML    73    71 3    76     6     1     1    30    48  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR    74    71 3    76     6     1     1    29    48  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D    75    71 3    76     6     0     0    27    46  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL    76    76 5    76     6     1     1    31    50  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR    77    77 6    77     5     1     1    30    49  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   50 ]     51     65 g c - -
+    MP    78    77 6    82     6     2     2    29    48  -9.103  -9.042  -0.021  -7.819  -8.099  -8.494 -3.267 -2.724 -3.283  0.878 -2.942 -4.019  1.414 -3.339 -3.332  2.409 -3.787 -0.532  1.888 -3.392 -0.592 -2.217 
+    ML    79    77 6    82     6     1     1    28    46  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR    80    77 6    82     6     1     1    27    46  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D    81    77 6    82     6     0     0    25    44  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL    82    82 5    82     6     1     1    29    48  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR    83    83 6    83     5     1     1    28    47  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   51 ]     52     64 G C - -
+    MP    84    83 6    88     6     2     2    27    46  -9.103  -9.042  -0.021  -7.819  -8.099  -8.494 -4.726 -3.086 -4.823  0.211 -5.210 -4.688 -0.578 -5.065 -4.317  3.634 -4.655 -0.784 -0.964 -4.457 -2.615 -3.700 
+    ML    85    83 6    88     6     1     1    26    45  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR    86    83 6    88     6     1     1    26    45  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D    87    83 6    88     6     0     0    24    43  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL    88    88 5    88     6     1     1    27    46  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR    89    89 6    89     5     1     1    26    45  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   52 ]     53     63 g c - -
+    MP    90    89 6    94     6     2     2    25    44  -9.103  -9.042  -0.021  -7.819  -8.099  -8.494 -3.267 -2.724 -3.283  0.878 -2.942 -4.019  1.414 -3.339 -3.332  2.409 -3.787 -0.532  1.888 -3.392 -0.592 -2.217 
+    ML    91    89 6    94     6     1     1    24    43  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR    92    89 6    94     6     1     1    24    43  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D    93    89 6    94     6     0     0    23    42  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL    94    94 5    94     6     1     1    25    44  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR    95    95 6    95     5     1     1    24    43  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   53 ]     54     62 G C - -
+    MP    96    95 6   100     4     2     2    23    42  -6.937  -7.144  -0.054  -5.558                 -4.726 -3.086 -4.823  0.211 -5.210 -4.688 -0.578 -5.065 -4.317  3.634 -4.655 -0.784 -0.964 -4.457 -2.615 -3.700 
+    ML    97    95 6   100     4     1     1    24    43  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
+    MR    98    95 6   100     4     1     1    23    42  -4.809  -3.838  -1.706  -0.766                  0.368 -0.385 -0.191  0.094 
+     D    99    95 6   100     4     0     0    22    41  -4.568  -4.250  -2.265  -0.520                 
+    IL   100   100 5   100     4     1     1    25    44  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
+    IR   101   101 6   101     3     1     1    24    43  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   54 ]     55      - U - - -
+    ML   102   101 6   104     3     1     1    20    39  -7.954  -0.021  -6.608                         -1.467 -1.466 -2.199  1.613 
+     D   103   101 6   104     3     0     0    19    38  -6.174  -1.687  -0.566                         
+    IL   104   104 3   104     3     1     1    23    42  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   55 ]     56      - U - - -
+    ML   105   104 3   107     3     1     1    19    37  -7.954  -0.021  -6.608                         -1.467 -1.466 -2.199  1.613 
+     D   106   104 3   107     3     0     0    18    37  -6.174  -1.687  -0.566                         
+    IL   107   107 3   107     3     1     1    22    41  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   56 ]     57      - C - - -
+    ML   108   107 3   110     3     1     1    18    36  -7.954  -0.021  -6.608                         -1.716  1.617 -2.539 -1.135 
+     D   109   107 3   110     3     0     0    17    36  -6.174  -1.687  -0.566                         
+    IL   110   110 3   110     3     1     1    21    40  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   57 ]     58      - G - - -
+    ML   111   110 3   113     3     1     1    16    35  -7.954  -0.021  -6.608                         -1.559 -2.775  1.719 -2.162 
+     D   112   110 3   113     3     0     0    16    34  -6.174  -1.687  -0.566                         
+    IL   113   113 3   113     3     1     1    20    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   58 ]     59      - A - - -
+    ML   114   113 3   116     3     1     1    15    33  -7.954  -0.021  -6.608                          1.714 -2.351 -1.985 -1.891 
+     D   115   113 3   116     3     0     0    15    33  -6.174  -1.687  -0.566                         
+    IL   116   116 3   116     3     1     1    19    37  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   59 ]     60      - u - - -
+    ML   117   116 3   119     3     1     1    13    31  -7.954  -0.021  -6.608                         -0.697  0.451 -1.474  0.728 
+     D   118   116 3   119     3     0     0    13    32  -6.174  -1.687  -0.566                         
+    IL   119   119 3   119     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   60 ]     61      - u - - -
+    ML   120   119 3   122     2     1     1     1     1       *   0.000                                 -0.698  0.466 -1.475  0.716 
+     D   121   119 3   122     2     0     0     0     0       *   0.000                                 
+    IL   122   122 3   122     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
+                                             [ END    61 ]      -      - - - - -
+     E   123   122 3    -1     0     0     0     0     0                                                 
+                                             [ BEGL   12 ]      -      - - - - -
+     S   124    54 1   125     1     0     4    50    69   0.000                                         
+                                             [ BIF    13 ]      -      - - - - -
+     B   125   124 1   126   176     0     4    50    69                                                 
+                                             [ BEGL   14 ]      -      - - - - -
+     S   126   125 1   127     4     0     0    31    49  -0.045  -6.828  -6.235  -6.875                 
+                                             [ MATP   15 ]     10     26 G C - -
+    MP   127   126 1   131     6     2     2    31    50  -9.103  -9.042  -0.021  -7.819  -8.099  -8.494 -4.726 -3.086 -4.823  0.211 -5.210 -4.688 -0.578 -5.065 -4.317  3.634 -4.655 -0.784 -0.964 -4.457 -2.615 -3.700 
+    ML   128   126 1   131     6     1     1    29    48  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR   129   126 1   131     6     1     1    29    48  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D   130   126 1   131     6     0     0    27    46  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL   131   131 5   131     6     1     1    30    49  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR   132   132 6   132     5     1     1    30    49  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   16 ]     11     25 c g - -
+    MP   133   132 6   137     6     2     2    29    47  -9.103  -9.042  -0.021  -7.819  -8.099  -8.494 -3.645 -3.572 -3.530  0.166 -2.488 -4.110  2.664 -3.192 -3.541  0.423 -3.935 -1.548  2.309 -3.788 -0.162 -2.413 
+    ML   134   132 6   137     6     1     1    27    46  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR   135   132 6   137     6     1     1    27    46  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D   136   132 6   137     6     0     0    25    44  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL   137   137 5   137     6     1     1    28    47  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR   138   138 6   138     5     1     1    28    47  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   17 ]     12     24 g c - -
+    MP   139   138 6   143     6     2     2    27    45  -9.103  -9.042  -0.021  -7.819  -8.099  -8.494 -3.267 -2.724 -3.283  0.878 -2.942 -4.019  1.414 -3.339 -3.332  2.409 -3.787 -0.532  1.888 -3.392 -0.592 -2.217 
+    ML   140   138 6   143     6     1     1    26    45  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR   141   138 6   143     6     1     1    26    45  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D   142   138 6   143     6     0     0    24    43  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL   143   143 5   143     6     1     1    26    45  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR   144   144 6   144     5     1     1    26    45  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   18 ]     13     23 c g - -
+    MP   145   144 6   149     4     2     2    25    43  -6.937  -7.144  -0.054  -5.558                 -3.062 -2.991 -3.078  0.453 -2.412 -3.763  2.525 -2.992 -3.107  0.713 -3.560 -1.119  1.151 -3.287 -0.202  1.395 
+    ML   146   144 6   149     4     1     1    25    44  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
+    MR   147   144 6   149     4     1     1    25    44  -4.809  -3.838  -1.706  -0.766                  0.368 -0.385 -0.191  0.094 
+     D   148   144 6   149     4     0     0    24    43  -4.568  -4.250  -2.265  -0.520                 
+    IL   149   149 5   149     4     1     1    27    46  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
+    IR   150   150 6   150     3     1     1    26    45  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   19 ]     14      - A - - -
+    ML   151   150 6   153     3     1     1    22    40  -7.954  -0.021  -6.608                          1.714 -2.351 -1.985 -1.891 
+     D   152   150 6   153     3     0     0    21    40  -6.174  -1.687  -0.566                         
+    IL   153   153 3   153     3     1     1    25    43  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   20 ]     15      - a - - -
+    ML   154   153 3   156     3     1     1    20    39  -7.954  -0.021  -6.608                          0.698 -1.388  0.507 -0.799 
+     D   155   153 3   156     3     0     0    20    38  -6.174  -1.687  -0.566                         
+    IL   156   156 3   156     3     1     1    24    42  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   21 ]     16      - u - - -
+    ML   157   156 3   159     3     1     1    19    38  -7.954  -0.445  -1.937                         -0.697  0.451 -1.474  0.728 
+     D   158   156 3   159     3     0     0    19    37  -6.174  -1.687  -0.566                         
+    IL   159   159 3   159     3     1     1    23    41  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   22 ]     17      - U - - -
+    ML   160   159 3   162     3     1     1    18    37  -7.537  -0.028  -6.191                         -0.748 -0.887 -1.429  1.318 
+     D   161   159 3   162     3     0     0    17    36  -7.898  -0.338  -2.290                         
+    IL   162   162 3   162     3     1     1    21    40  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   23 ]     18      - G - - -
+    ML   163   162 3   165     3     1     1    17    35  -7.954  -0.021  -6.608                         -1.559 -2.775  1.719 -2.162 
+     D   164   162 3   165     3     0     0    16    35  -6.174  -1.687  -0.566                         
+    IL   165   165 3   165     3     1     1    20    39  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   24 ]     19      - G - - -
+    ML   166   165 3   168     3     1     1    15    33  -7.954  -0.021  -6.608                         -1.559 -2.775  1.719 -2.162 
+     D   167   165 3   168     3     0     0    15    33  -6.174  -1.687  -0.566                         
+    IL   168   168 3   168     3     1     1    19    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   25 ]     20      - g - - -
+    ML   169   168 3   171     3     1     1    13    25  -1.972  -0.445  -6.608                         -0.334  0.192  0.338 -0.322 
+     D   170   168 3   171     3     0     0    10    22  -6.174  -1.687  -0.566                         
+    IL   171   171 3   171     3     1     1    13    25  -2.100  -0.452  -4.800                          0.000  0.000  0.000  0.000 
+                                             [ MATL   26 ]     22      - A - - -
+    ML   172   171 3   174     2     1     1     1     1       *   0.000                                  1.714 -2.351 -1.985 -1.891 
+     D   173   171 3   174     2     0     0     0     0       *   0.000                                 
+    IL   174   174 3   174     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
+                                             [ END    27 ]      -      - - - - -
+     E   175   174 3    -1     0     0     0     0     0                                                 
+                                             [ BEGR   28 ]      -      - - - - -
+     S   176   125 1   177     3     0     0    32    51  -7.954  -0.021  -6.608                         
+    IL   177   177 2   177     3     1     1    36    55  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   29 ]     27      - a - - -
+    ML   178   177 2   180     5     1     1    32    51  -7.084  -0.039  -6.900  -7.112  -8.004          0.698 -1.388  0.507 -0.799 
+     D   179   177 2   180     5     0     0    31    50  -4.959  -0.803  -4.221  -2.596  -2.508         
+    IL   180   180 3   180     5     1     1    32    51  -2.408  -0.496  -4.087  -5.920  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   30 ]     28     44 c g - -
+    MP   181   180 3   185     6     2     2    31    50  -9.103  -9.042  -0.021  -7.819  -8.099  -8.494 -3.715 -3.704 -3.557 -0.032 -2.461 -4.079  2.720 -3.195 -3.586  0.182 -3.949 -1.773  1.122 -3.840  1.943 -2.473 
+    ML   182   180 3   185     6     1     1    30    48  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR   183   180 3   185     6     1     1    29    48  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D   184   180 3   185     6     0     0    27    46  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL   185   185 5   185     6     1     1    31    50  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR   186   186 6   186     5     1     1    30    49  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   31 ]     29     43 C G - -
+    MP   187   186 6   191     6     2     2    29    48  -9.103  -9.042  -0.021  -7.819  -8.099  -8.494 -4.534 -4.439 -4.227 -0.672 -2.948 -4.641  3.546 -3.756 -4.276 -0.430 -4.538 -2.386  0.568 -4.605 -0.654 -3.116 
+    ML   188   186 6   191     6     1     1    28    46  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR   189   186 6   191     6     1     1    27    46  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D   190   186 6   191     6     0     0    25    44  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL   191   191 5   191     6     1     1    29    48  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR   192   192 6   192     5     1     1    28    47  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   32 ]     30     42 A U - -
+    MP   193   192 6   197     6     2     2    27    46  -9.103  -9.042  -0.021  -7.819  -8.099  -8.494 -3.778 -2.813 -3.798  3.323 -4.129 -5.190  0.170 -3.841 -3.690  1.093 -4.237 -0.291 -0.248 -4.380 -1.771 -2.632 
+    ML   194   192 6   197     6     1     1    26    45  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR   195   192 6   197     6     1     1    26    45  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D   196   192 6   197     6     0     0    24    43  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL   197   197 5   197     6     1     1    27    46  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR   198   198 6   198     5     1     1    26    45  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   33 ]     31     41 g c - -
+    MP   199   198 6   203     6     2     2    25    44  -9.103  -9.042  -0.021  -7.819  -8.099  -8.494 -3.399 -2.852 -3.384  0.778 -2.912 -4.071  2.215 -3.369 -3.430  2.395 -3.863 -0.655  0.991 -3.497 -0.541 -2.295 
+    ML   200   198 6   203     6     1     1    24    43  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR   201   198 6   203     6     1     1    24    43  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D   202   198 6   203     6     0     0    23    42  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL   203   203 5   203     6     1     1    25    44  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR   204   204 6   204     5     1     1    24    43  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   34 ]     32     40 g c - -
+    MP   205   204 6   209     4     2     2    23    42  -6.937  -7.144  -0.054  -5.558                 -3.526 -2.500 -3.557  2.082 -3.985 -4.395  0.429 -3.836 -3.552  2.834 -4.007 -0.120  0.119 -3.682 -1.529 -2.458 
+    ML   206   204 6   209     4     1     1    24    43  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
+    MR   207   204 6   209     4     1     1    23    42  -4.809  -3.838  -1.706  -0.766                  0.368 -0.385 -0.191  0.094 
+     D   208   204 6   209     4     0     0    22    41  -4.568  -4.250  -2.265  -0.520                 
+    IL   209   209 5   209     4     1     1    25    44  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
+    IR   210   210 6   210     3     1     1    24    43  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   35 ]     33      - C - - -
+    ML   211   210 6   213     3     1     1    20    39  -7.954  -0.021  -6.608                         -1.716  1.617 -2.539 -1.135 
+     D   212   210 6   213     3     0     0    19    38  -6.174  -1.687  -0.566                         
+    IL   213   213 3   213     3     1     1    23    42  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   36 ]     34      - U - - -
+    ML   214   213 3   216     3     1     1    19    37  -7.954  -0.021  -6.608                         -1.467 -1.466 -2.199  1.613 
+     D   215   213 3   216     3     0     0    18    37  -6.174  -1.687  -0.566                         
+    IL   216   216 3   216     3     1     1    22    41  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   37 ]     35      - u - - -
+    ML   217   216 3   219     3     1     1    18    36  -7.954  -0.021  -6.608                         -0.363 -0.937  0.342  0.519 
+     D   218   216 3   219     3     0     0    17    36  -6.174  -1.687  -0.566                         
+    IL   219   219 3   219     3     1     1    21    40  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   38 ]     36      - u - - -
+    ML   220   219 3   222     3     1     1    16    35  -7.954  -0.021  -6.608                          0.558 -0.842 -1.047  0.571 
+     D   221   219 3   222     3     0     0    16    34  -6.174  -1.687  -0.566                         
+    IL   222   222 3   222     3     1     1    20    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   39 ]     37      - a - - -
+    ML   223   222 3   225     3     1     1    15    33  -7.954  -0.021  -6.608                          0.628  0.246 -1.103 -0.315 
+     D   224   222 3   225     3     0     0    15    33  -6.174  -1.687  -0.566                         
+    IL   225   225 3   225     3     1     1    19    37  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   40 ]     38      - a - - -
+    ML   226   225 3   228     3     1     1    13    31  -7.954  -0.021  -6.608                          0.698 -1.388  0.507 -0.799 
+     D   227   225 3   228     3     0     0    13    32  -6.174  -1.687  -0.566                         
+    IL   228   228 3   228     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   41 ]     39      - a - - -
+    ML   229   228 3   231     2     1     1     1     1       *   0.000                                  0.628  0.246 -1.103 -0.315 
+     D   230   228 3   231     2     0     0     0     0       *   0.000                                 
+    IL   231   231 3   231     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
+                                             [ END    42 ]      -      - - - - -
+     E   232   231 3    -1     0     0     0     0     0                                                 
+//
+HMMER3/f [3.1b3 | July 2016]
+NAME  dataset_838
+LENG  73
+MAXL  164
+ALPH  RNA
+RF    no
+MM    no
+CONS  yes
+CS    yes
+MAP   yes
+DATE  Thu Dec 15 13:43:26 2016
+COM   [1] cmbuild -F --fast --symfrac 0.5 --wpb --p7ere 0.38 --EmN 200 --EvN 200 --ElfN 200 --EgfN 200 --eent /home/wanli/galaxy/database/files/000/dataset_839.dat /home/wanli/galaxy/database/files/000/dataset_838.dat
+NSEQ  2
+EFFN  1.628906
+CKSUM 1256650105
+STATS LOCAL MSV       -8.5184  0.73715
+STATS LOCAL VITERBI  -10.4826  0.73715
+STATS LOCAL FORWARD   -2.6863  0.73715
+HMM          A        C        G        U   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.47076  1.39566  1.26733  1.42298
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   1.93554  1.65715  0.96626  1.25713      1 g - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.82012  0.35286  2.54849  1.83556      2 C - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.00424  1.20191  0.98969  1.64544      3 g - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   1.87354  2.44340  0.41370  2.31917      4 G - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   0.53128  2.34938  1.53172  2.29704      5 A - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.58639  1.62982  2.28826  0.46633      6 U - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   1.38468  1.54821  1.52008  1.14484      7 u - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.26593  2.29030  2.76601  0.31181      8 U - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   0.23431  2.86460  2.62614  2.53179      9 A - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.35339  2.85006  0.24040  2.80018     10 G - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.36315  0.89679  2.07651  0.98716     11 c - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   1.94223  1.65192  0.97261  1.24884     12 g - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.11261  1.00158  1.82880  1.04648     13 c - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   0.23431  2.86460  2.62614  2.53179     14 A - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   0.91793  2.28477  1.06301  1.87441     15 a - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   1.81039  1.10283  2.34106  0.89586     16 u - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.33427  3.73767  1.34581  1.46634  0.26236  1.09861  0.40547
+     17   1.82572  1.94090  2.28977  0.52082     17 U - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.06440  3.46780  3.46780  1.46634  0.26236  0.16798  1.86670
+     18   2.30534  3.12204  0.23733  2.69597     18 G - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.30534  3.12204  0.23733  2.69597     19 G - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   1.57379  1.27789  1.18703  1.56547     20 g - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.33427  1.34581  3.73767  0.17384  1.83528  1.09861  0.40547
+     21   0.23431  2.86460  2.62614  2.53179     22 A - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   1.73793  1.99628  0.88761  1.28505     23 g - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   1.40058  1.07188  1.48214  1.69265     24 c - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   1.13668  2.23736  0.79225  2.12401     25 g - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.99476  0.28499  2.66857  2.05123     26 C - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.91793  2.28477  1.06301  1.87441     27 a - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.44995  0.86440  2.19692  0.96430     28 c - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.83282  0.35078  2.55365  1.83749     29 C - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   0.53070  2.35068  1.53174  2.29916     30 A - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.00633  1.20137  0.98908  1.64602     31 g - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   1.28301  2.25438  0.68949  2.15394     32 G - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.39558  0.32068  2.95885  2.02994     33 C - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.26593  2.29030  2.76601  0.31181     34 U - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   1.60034  1.99549  1.17547  1.03972     35 u - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   1.01126  1.93561  2.07335  1.00474     36 u - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.96800  1.24226  2.10248  1.56411     37 a - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.91793  2.28477  1.06301  1.87441     38 a - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   0.96800  1.24226  2.10248  1.56411     39 a - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.38672  0.79160  2.07045  1.11225     40 c - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   1.88903  1.08176  1.08725  1.75655     41 c - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53186  1.78457  2.16649  0.44935     42 U - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.11226  2.72003  0.30387  2.58756     43 G - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   1.77763  2.35781  0.46620  2.21683     44 G - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23431  2.86460  2.62614  2.53179     45 A - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.30534  3.12204  0.23733  2.69597     46 G - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     46   0.91793  2.28477  1.06301  1.87441     47 a - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.33427  3.73767  1.34581  1.46634  0.26236  1.09861  0.40547
+     47   1.82572  1.94090  2.28977  0.52082     48 U - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.06440  3.46780  3.46780  1.46634  0.26236  0.16798  1.86670
+     48   2.39558  0.32068  2.95885  2.02994     49 C - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     49   2.82007  0.35287  2.54847  1.83555     50 C - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     50   1.93986  1.65192  0.97340  1.24897     51 g - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     51   2.34658  2.84349  0.24246  2.79056     52 G - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     52   1.94038  1.65192  0.97323  1.24894     53 g - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     53   2.34693  2.84383  0.24235  2.79106     54 G - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     54   2.26593  2.29030  2.76601  0.31181     55 U - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     55   2.26593  2.29030  2.76601  0.31181     56 U - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     56   2.39558  0.32068  2.95885  2.02994     57 C - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     57   2.30534  3.12204  0.23733  2.69597     58 G - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     58   0.23431  2.86460  2.62614  2.53179     59 A - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     59   1.81039  1.10283  2.34106  0.89586     60 u - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     60   1.81068  1.09350  2.34184  0.90321     61 u - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     61   3.00308  0.28386  2.67186  2.05286     62 C - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     62   1.40018  1.07245  1.48219  1.69206     63 c - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     63   2.99483  0.28498  2.66860  2.05124     64 C - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     64   1.39930  1.07371  1.48229  1.69078     65 c - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     65   2.09668  2.70224  0.31051  2.56386     66 G - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     66   1.29468  1.69346  1.37752  1.23812     67 u - - )
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     67   0.53113  2.46484  1.46640  2.34049     68 A - - )
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     68   2.52828  1.78440  2.16542  0.45004     69 U - - )
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     69   2.54850  0.71164  2.25714  1.11990     70 c - - )
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     70   1.88844  1.08198  1.08743  1.75627     71 c - - )
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     71   2.11092  2.71850  0.30443  2.58552     72 G - - )
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     72   1.40959  1.06246  1.48726  1.69195     73 c - - )
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     73   0.90952  2.28340  1.07370  1.87338     74 a - - :
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//