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planemo upload for repository https://github.com/bgruening/galaxytools/main/tools/sylph commit 6ac2834ca0a21512c9986e2fb8d0dcda1c4b0e18
author bgruening
date Fri, 23 May 2025 09:49:04 +0000
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d2a4c2cb8779 planemo upload for repository https://github.com/bgruening/galaxytools/main/tools/sylph commit 6ac2834ca0a21512c9986e2fb8d0dcda1c4b0e18
bgruening
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1 For Galaxy admins and local runs:
d2a4c2cb8779 planemo upload for repository https://github.com/bgruening/galaxytools/main/tools/sylph commit 6ac2834ca0a21512c9986e2fb8d0dcda1c4b0e18
bgruening
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d2a4c2cb8779 planemo upload for repository https://github.com/bgruening/galaxytools/main/tools/sylph commit 6ac2834ca0a21512c9986e2fb8d0dcda1c4b0e18
bgruening
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3 The databases for sylph have associated metadata files. These files MUST be paired with the correct databases to output correctly. Here is the easiest location to download databases and metadata files:
d2a4c2cb8779 planemo upload for repository https://github.com/bgruening/galaxytools/main/tools/sylph commit 6ac2834ca0a21512c9986e2fb8d0dcda1c4b0e18
bgruening
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4 For databases: https://github.com/bluenote-1577/sylph/wiki/Pre%E2%80%90built-databases
d2a4c2cb8779 planemo upload for repository https://github.com/bgruening/galaxytools/main/tools/sylph commit 6ac2834ca0a21512c9986e2fb8d0dcda1c4b0e18
bgruening
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5 For metadata: https://github.com/bluenote-1577/sylph-utils
d2a4c2cb8779 planemo upload for repository https://github.com/bgruening/galaxytools/main/tools/sylph commit 6ac2834ca0a21512c9986e2fb8d0dcda1c4b0e18
bgruening
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d2a4c2cb8779 planemo upload for repository https://github.com/bgruening/galaxytools/main/tools/sylph commit 6ac2834ca0a21512c9986e2fb8d0dcda1c4b0e18
bgruening
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7 The tool assumes the directory the data_table references to be
d2a4c2cb8779 planemo upload for repository https://github.com/bgruening/galaxytools/main/tools/sylph commit 6ac2834ca0a21512c9986e2fb8d0dcda1c4b0e18
bgruening
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8 <name_of_organism>
d2a4c2cb8779 planemo upload for repository https://github.com/bgruening/galaxytools/main/tools/sylph commit 6ac2834ca0a21512c9986e2fb8d0dcda1c4b0e18
bgruening
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9 - database.syldb
d2a4c2cb8779 planemo upload for repository https://github.com/bgruening/galaxytools/main/tools/sylph commit 6ac2834ca0a21512c9986e2fb8d0dcda1c4b0e18
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10 - metadata.tsv.gz