Mercurial > repos > bgruening > sylph_query

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planemo upload for repository https://github.com/bgruening/galaxytools/main/tools/sylph commit 6ac2834ca0a21512c9986e2fb8d0dcda1c4b0e18
author bgruening
date Fri, 23 May 2025 09:49:04 +0000
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For Galaxy admins and local runs:

The databases for sylph have associated metadata files. These files MUST be paired with the correct databases to output correctly. Here is the easiest location to download databases and metadata files:
For databases: https://github.com/bluenote-1577/sylph/wiki/Pre%E2%80%90built-databases
For metadata: https://github.com/bluenote-1577/sylph-utils

The tool assumes the directory the data_table references to be
<name_of_organism>
    - database.syldb
    - metadata.tsv.gz