Mercurial > repos > bgruening > uniprot_rest_interface

changeset 6:054483e27a35 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/uniprot_rest_interface commit f7a71c09b68d85a73a7ce761b4e64d5de29daee0
author bgruening
date Sun, 16 Sep 2018 13:41:08 -0400
parents f7ebd1b4783b
children bfdc6a7ffd3a
files uniprot.xml
diffstat 1 files changed, 5 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/uniprot.xml	Sat Sep 15 10:23:35 2018 -0400
+++ b/uniprot.xml	Sun Sep 16 13:41:08 2018 -0400
@@ -1,20 +1,20 @@
-<tool id="uniprot" name="UniProt" version="0.1">
+<tool id="uniprot" name="UniProt" version="0.2">
     <description>ID mapping and retrieval</description>
     <macros>
          <import>macros.xml</import>
     </macros>
     <requirements>
-        <requirement type="package" version="2.7">requests</requirement>
+        <requirement type="package" version="2.19.1">requests</requirement>
     </requirements>
     <version_command>echo "UniProt ID mapping for Galaxy in version 0.1"</version_command>
     <command detect_errors="aggressive"><![CDATA[
 
-        cut -f ${id_column} $infile > id_file.tabular &&
+        cut -f ${id_column} '$infile' > id_file.tabular &&
 
-        $__tool_directory__/uniprot.py
+        '$__tool_directory__/uniprot.py'
 
         #if $tool.tool_choice == "retrieve":
-            retrieve -f $tool.format $infile ./output
+            retrieve -f $tool.format id_file.tabular ./output
         #elif $tool.tool_choice == "map":
             map