comparison COBRAxy/flux_simulation_beta.py @ 421:f9fe44c65772 draft

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420:0877682fff48

    #ARGS.bounds_name = ARGS.name.split(",")
    #ARGS.output_types = ARGS.output_type.split(",")
    #ARGS.output_type_analysis = ARGS.output_type_analysis.split(",")

    # --- Normalize inputs (the tool may pass comma-separated --input and either --name or --names) ---
    ARGS.input_files = ARGS.input.split(",") if getattr(ARGS, "input", None) else []
    ARGS.file_names = ARGS.name.split(",")
    # output types (required) -> list
    ARGS.output_types = ARGS.output_type.split(",") if getattr(ARGS, "output_type", None) else []
    # optional analysis output types -> list or empty
    ARGS.output_type_analysis = ARGS.output_type_analysis.split(",") if getattr(ARGS, "output_type_analysis", None) else []

    
    if ARGS.model_and_bounds == "True":
        # MODE 1: Model + bounds (separate files)
        print("=== MODE 1: Model + Bounds (separate files) ===")
        

421:f9fe44c65772

    #ARGS.bounds_name = ARGS.name.split(",")
    #ARGS.output_types = ARGS.output_type.split(",")
    #ARGS.output_type_analysis = ARGS.output_type_analysis.split(",")

    # --- Normalize inputs (the tool may pass comma-separated --input and either --name or --names) ---
    ARGS.input_files = ARGS.input.split(",") if ARGS.input else []
    ARGS.file_names = ARGS.name.split(",")
    # output types (required) -> list
    ARGS.output_types = ARGS.output_type.split(",") if ARGS.output_type else []
    # optional analysis output types -> list or empty
    ARGS.output_type_analysis = ARGS.output_type_analysis.split(",") if ARGS.output_type_analysis else []

    print("=== INPUT FILES ===")
    print(ARGS.input_files)
    print(ARGS.file_names)
    print(ARGS.output_type)
    print(ARGS.output_types)
    print(ARGS.output_type_analysis)
    
    if ARGS.model_and_bounds == "True":
        # MODE 1: Model + bounds (separate files)
        print("=== MODE 1: Model + Bounds (separate files) ===")