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changeset 7:3a484dc2bced draft

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Uploaded
author bimib
date Wed, 22 May 2024 13:11:31 +0000
parents eddc256691a0
children 54e2baa59e28
files Marea-Marea_stageTriennale_dev/rps_generator.py
diffstat 1 files changed, 3 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/Marea-Marea_stageTriennale_dev/rps_generator.py	Wed May 22 13:10:45 2024 +0000
+++ b/Marea-Marea_stageTriennale_dev/rps_generator.py	Wed May 22 13:11:31 2024 +0000
@@ -217,7 +217,9 @@
         abundances = { metab : abundances[pos] for metab, abundances in abundances_dict.items() }
         rps_scores[cell_line_name] = calculate_rps(reactions, abundances, black_list, missing_list)
     
-    pd.DataFrame.from_dict(rps_scores).to_csv(ARGS.rps_output, sep = '\t', index = True)
+    pd.DataFrame.from_dict(rps_scores) \
+                .rename(columns={'Unnamed: 0': 'Reactions'}, inplace=True) \
+                .to_csv(ARGS.rps_output, sep = '\t', na_rep = "None", index = False)
 
 ############################ main ####################################
 def main() -> None: