Mercurial > repos > bitlab > gecko
changeset 8:dbdb10e4c8b5 draft
fixed binary format in frags align
| author | bitlab |
|---|---|
| date | Tue, 17 Nov 2020 13:04:23 +0000 |
| parents | 3872220d0924 |
| children | aec70bb1ae27 |
| files | gecko/frags2align.xml |
| diffstat | 1 files changed, 2 insertions(+), 2 deletions(-) [+] |
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--- a/gecko/frags2align.xml Tue Nov 17 13:03:09 2020 +0000 +++ b/gecko/frags2align.xml Tue Nov 17 13:04:23 2020 +0000 @@ -1,9 +1,9 @@ <tool id="frags2align" name="Frags to align"> <description>Extract alignments from a binary Frags file</description> <inputs> - <param name="fragsFile" format="data" label="Frags file" help="Binary Frags file" /> + <param name="fragsFile" type="data" label="Frags file" help="Binary Frags file" /> <param name="fastaX" type="data" format="fasta" label="Sequence X" help="Query sequence file in fasta format"/> - <param name="fastaY" type="data" value="fasta" label="Sequence Y" help="Reference sequence file in fasta format" /> + <param name="fastaY" type="data" format="fasta" label="Sequence Y" help="Reference sequence file in fasta format" /> </inputs> <command> make all -C ${__tool_directory__}/src/ ; ${__tool_directory__}/bin/frags2align.sh $fragsFile $fastaX $fastaY $alignments </command> <outputs>