annotate toolshed_version/ProHits_DotPlot_Generator.xml @ 7:59e57834c366 draft

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<tool id="ProHits_DotPlot_Generator" name="ProHits DotPlot Generator">
  <description></description>
  <command interpreter="python">ProHits_DotPlot_Generator.py $saint_file $FDR1 $FDR2 $spec_max $dotplot $heatmap $estimated $stats</command>
  <inputs>
    <param format="txt" name="saint_file" type="data" label="SAINT Output"/>
    <param type="float" name="FDR1" label="False Discovery Rate 1" value="0.01"/>
    <param type="float" name="FDR2" label="False Discovery Rate 2" value="0.025"/>
    <param type="integer" name="spec_max" label="Maximum spectral count" value="50"/>
  </inputs>
  <outputs>
    <data format="pdf" name="dotplot" label="DotPlot" />    
    <data format="pdf" name="heatmap" label="Heatmap" /> 
    <data format="pdf" name="estimated" label="Estimated" />  
    <data format="pdf" name="stats" label="Stats" />   
  </outputs>
  <stdio>
    <regex match="error"
	   source="stdout"
           level="fatal"
           description="Unknown error"/>
  </stdio> 

  <tests>
    <test>
      <param name="input" value="fa_gc_content_input.fa"/>
      <output name="out_file1" file="fa_gc_content_output.txt"/>
    </test>
  </tests>
  <help>
  </help>
</tool>