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1 <tool id="ProHits_DotPlot_Generator" name="ProHits DotPlot Generator">
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2 <description></description>
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3 <command interpreter="python">ProHits_DotPlot_Generator.py $saint_file $FDR1 $FDR2 $spec_max $dotplot $heatmap $estimated $stats</command>
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4 <inputs>
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5 <param format="txt" name="saint_file" type="data" label="SAINT Output"/>
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6 <param type="float" name="FDR1" label="False Discovery Rate 1" value="0.01"/>
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7 <param type="float" name="FDR2" label="False Discovery Rate 2" value="0.025"/>
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8 <param type="integer" name="spec_max" label="Maximum spectral count" value="50"/>
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9 </inputs>
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10 <outputs>
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11 <data format="pdf" name="dotplot" label="DotPlot" />
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12 <data format="pdf" name="heatmap" label="Heatmap" />
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13 <data format="pdf" name="estimated" label="Estimated" />
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14 <data format="pdf" name="stats" label="Stats" />
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15 </outputs>
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16 <stdio>
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17 <regex match="error"
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18 source="stdout"
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19 level="fatal"
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20 description="Unknown error"/>
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21 </stdio>
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22
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23 <tests>
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24 <test>
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25 <param name="input" value="fa_gc_content_input.fa"/>
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26 <output name="out_file1" file="fa_gc_content_output.txt"/>
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27 </test>
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28 </tests>
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29 <help>
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30 </help>
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31 </tool> |