Mercurial > repos > bornea > prohits_dotplot_generator
comparison toolshed_version/ProHits_DotPlot_Generator.xml @ 7:59e57834c366 draft
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author | bornea |
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date | Tue, 15 Mar 2016 15:30:44 -0400 |
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6:744905986eb9 | 7:59e57834c366 |
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1 <tool id="ProHits_DotPlot_Generator" name="ProHits DotPlot Generator"> | |
2 <description></description> | |
3 <command interpreter="python">ProHits_DotPlot_Generator.py $saint_file $FDR1 $FDR2 $spec_max $dotplot $heatmap $estimated $stats</command> | |
4 <inputs> | |
5 <param format="txt" name="saint_file" type="data" label="SAINT Output"/> | |
6 <param type="float" name="FDR1" label="False Discovery Rate 1" value="0.01"/> | |
7 <param type="float" name="FDR2" label="False Discovery Rate 2" value="0.025"/> | |
8 <param type="integer" name="spec_max" label="Maximum spectral count" value="50"/> | |
9 </inputs> | |
10 <outputs> | |
11 <data format="pdf" name="dotplot" label="DotPlot" /> | |
12 <data format="pdf" name="heatmap" label="Heatmap" /> | |
13 <data format="pdf" name="estimated" label="Estimated" /> | |
14 <data format="pdf" name="stats" label="Stats" /> | |
15 </outputs> | |
16 <stdio> | |
17 <regex match="error" | |
18 source="stdout" | |
19 level="fatal" | |
20 description="Unknown error"/> | |
21 </stdio> | |
22 | |
23 <tests> | |
24 <test> | |
25 <param name="input" value="fa_gc_content_input.fa"/> | |
26 <output name="out_file1" file="fa_gc_content_output.txt"/> | |
27 </test> | |
28 </tests> | |
29 <help> | |
30 </help> | |
31 </tool> |