Mercurial > repos > bornea > prohits_dotplot_generator
diff toolshed_version/ProHits_DotPlot_Generator.xml @ 7:59e57834c366 draft
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author | bornea |
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date | Tue, 15 Mar 2016 15:30:44 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/toolshed_version/ProHits_DotPlot_Generator.xml Tue Mar 15 15:30:44 2016 -0400 @@ -0,0 +1,31 @@ +<tool id="ProHits_DotPlot_Generator" name="ProHits DotPlot Generator"> + <description></description> + <command interpreter="python">ProHits_DotPlot_Generator.py $saint_file $FDR1 $FDR2 $spec_max $dotplot $heatmap $estimated $stats</command> + <inputs> + <param format="txt" name="saint_file" type="data" label="SAINT Output"/> + <param type="float" name="FDR1" label="False Discovery Rate 1" value="0.01"/> + <param type="float" name="FDR2" label="False Discovery Rate 2" value="0.025"/> + <param type="integer" name="spec_max" label="Maximum spectral count" value="50"/> + </inputs> + <outputs> + <data format="pdf" name="dotplot" label="DotPlot" /> + <data format="pdf" name="heatmap" label="Heatmap" /> + <data format="pdf" name="estimated" label="Estimated" /> + <data format="pdf" name="stats" label="Stats" /> + </outputs> + <stdio> + <regex match="error" + source="stdout" + level="fatal" + description="Unknown error"/> + </stdio> + + <tests> + <test> + <param name="input" value="fa_gc_content_input.fa"/> + <output name="out_file1" file="fa_gc_content_output.txt"/> + </test> + </tests> + <help> + </help> +</tool> \ No newline at end of file