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1 <tool id="tagdust_architecture" name="Tagdust Architecture viewer" version="0.2">
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2 <description>Displays a tagdust Architecture file</description>
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3 <macros>
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4 <import>macros.xml</import>
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5 </macros>
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6 <expand macro="requirements"></expand>
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7 <expand macro="stdio"></expand>
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8 <expand macro="version_command"></expand>
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9 <command >
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10 cp $architecture.fields.path architecture.txt ;
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11 </command>
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12 <inputs>
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13 <expand macro="architecture"></expand>
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14 </inputs>
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15 <outputs>
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16 <data format="txt" name="architecturefile" label="The tagdust architecture." from_work_dir="architecture.txt"/>
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17 </outputs>
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18 <tests>
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19 <test>
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20 <param name="architecture" value="test_F:NNNNNNNN_S:TATAGGG_R:N" />
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21 <output name="architecturefile" file="../tool-data/F:NNNNNNNN_S:TATAGGG_R:N.txt"/>
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22 </test>
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23 <test>
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24 <param name="architecture" value="test_B:GTA_AAC_R:N" />
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25 <output name="architecturefile" file="../tool-data/B:GTA,AAC_R:N.txt"/>
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26 </test>
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27 <test>
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28 <param name="architecture" value="test_R:N" />
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29 <output name="architecturefile" file="../tool-data/R:N.txt"/>
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30 </test>
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31 </tests>
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32 <help>
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33 <![CDATA[
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34 This tools simply prints out the selected architecture without running tagdust.
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35
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36 Note both the single end and paired end tagdust tools will report the architecture to standard out.
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37
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38 ]]>
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39 @tagdust-documentation@
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40 </help>
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41 <expand macro="citations"></expand>
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42 </tool>
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