Mercurial > repos > brenninc > tagdust_2_31
comparison architecture.xml @ 0:40c86e14b674 draft
Uploaded first version of tagdust
author | brenninc |
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date | Mon, 09 May 2016 04:08:01 -0400 |
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-1:000000000000 | 0:40c86e14b674 |
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1 <tool id="tagdust_architecture" name="Tagdust Architecture viewer" version="0.2"> | |
2 <description>Displays a tagdust Architecture file</description> | |
3 <macros> | |
4 <import>macros.xml</import> | |
5 </macros> | |
6 <expand macro="requirements"></expand> | |
7 <expand macro="stdio"></expand> | |
8 <expand macro="version_command"></expand> | |
9 <command > | |
10 cp $architecture.fields.path architecture.txt ; | |
11 </command> | |
12 <inputs> | |
13 <expand macro="architecture"></expand> | |
14 </inputs> | |
15 <outputs> | |
16 <data format="txt" name="architecturefile" label="The tagdust architecture." from_work_dir="architecture.txt"/> | |
17 </outputs> | |
18 <tests> | |
19 <test> | |
20 <param name="architecture" value="test_F:NNNNNNNN_S:TATAGGG_R:N" /> | |
21 <output name="architecturefile" file="../tool-data/F:NNNNNNNN_S:TATAGGG_R:N.txt"/> | |
22 </test> | |
23 <test> | |
24 <param name="architecture" value="test_B:GTA_AAC_R:N" /> | |
25 <output name="architecturefile" file="../tool-data/B:GTA,AAC_R:N.txt"/> | |
26 </test> | |
27 <test> | |
28 <param name="architecture" value="test_R:N" /> | |
29 <output name="architecturefile" file="../tool-data/R:N.txt"/> | |
30 </test> | |
31 </tests> | |
32 <help> | |
33 <![CDATA[ | |
34 This tools simply prints out the selected architecture without running tagdust. | |
35 | |
36 Note both the single end and paired end tagdust tools will report the architecture to standard out. | |
37 | |
38 ]]> | |
39 @tagdust-documentation@ | |
40 </help> | |
41 <expand macro="citations"></expand> | |
42 </tool> |