changeset 1:11cb57237849 draft

planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 159373642da0dd9e011280de5515b020189dd521
author chrisd
date Thu, 24 Mar 2016 04:16:47 -0400
parents 834c10340bce
children 7550d3bc44a4
files Galaxy-Workflow-AmrPlusPlus_PE.ga amrplusplus_wf.ga repository_dependencies.xml
diffstat 3 files changed, 548 insertions(+), 560 deletions(-) [+]
line wrap: on
line diff
--- a/Galaxy-Workflow-AmrPlusPlus_PE.ga	Wed Mar 23 21:49:48 2016 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,559 +0,0 @@
-{
-    "a_galaxy_workflow": "true", 
-    "annotation": "", 
-    "format-version": "0.1", 
-    "name": "AmrPlusPlus_PE", 
-    "steps": {
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-            "annotation": "The genome to align non-host reads to", 
-            "content_id": null, 
-            "id": 0, 
-            "input_connections": {}, 
-            "inputs": [
-                {
-                    "description": "The genome to align non-host reads to", 
-                    "name": "AMR Database"
-                }
-            ], 
-            "label": "AMR Database", 
-            "name": "Input dataset", 
-            "outputs": [], 
-            "position": {
-                "left": 391, 
-                "top": 200
-            }, 
-            "tool_errors": null, 
-            "tool_id": null, 
-            "tool_state": "{\"name\": \"AMR Database\"}", 
-            "tool_version": null, 
-            "type": "data_input", 
-            "uuid": "66a5eb48-4b35-46cc-9b93-fd88d97d2218", 
-            "workflow_outputs": [
-                {
-                    "label": null, 
-                    "output_name": "output", 
-                    "uuid": "d30b93c8-aa9f-49eb-801f-5a02e68a876b"
-                }
-            ]
-        }, 
-        "1": {
-            "annotation": "Genome used to filter reads on", 
-            "content_id": null, 
-            "id": 1, 
-            "input_connections": {}, 
-            "inputs": [
-                {
-                    "description": "Genome used to filter reads on", 
-                    "name": "Host Genome"
-                }
-            ], 
-            "label": "Host Genome", 
-            "name": "Input dataset", 
-            "outputs": [], 
-            "position": {
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-                "top": 285
-            }, 
-            "tool_errors": null, 
-            "tool_id": null, 
-            "tool_state": "{\"name\": \"Host Genome\"}", 
-            "tool_version": null, 
-            "type": "data_input", 
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-            "workflow_outputs": [
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-                    "output_name": "output", 
-                    "uuid": "6b4607b2-f4d8-4b24-ade6-30b2a6377017"
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-        }, 
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-            "input_connections": {}, 
-            "inputs": [
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-                    "description": "Forward reads", 
-                    "name": "FastQ Forward"
-                }
-            ], 
-            "label": "FastQ Forward", 
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-                "top": 370
-            }, 
-            "tool_errors": null, 
-            "tool_id": null, 
-            "tool_state": "{\"name\": \"FastQ Forward\"}", 
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-                    "uuid": "cd11b688-012e-4d6e-bac7-a35c97057e8e"
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-                    "name": "FastQ Reverse"
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-                "top": 455
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-            "tool_id": null, 
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-                    "output_name": "output"
-                }
-            }, 
-            "inputs": [], 
-            "label": null, 
-            "name": "Trimmomatic", 
-            "outputs": [
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-                    "name": "fastq_out_paired", 
-                    "type": "input"
-                }, 
-                {
-                    "name": "fastq_out_unpaired", 
-                    "type": "input"
-                }, 
-                {
-                    "name": "fastq_out_r1_paired", 
-                    "type": "fastqsanger"
-                }, 
-                {
-                    "name": "fastq_out_r2_paired", 
-                    "type": "fastqsanger"
-                }, 
-                {
-                    "name": "fastq_out_r1_unpaired", 
-                    "type": "fastqsanger"
-                }, 
-                {
-                    "name": "fastq_out_r2_unpaired", 
-                    "type": "fastqsanger"
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\ No newline at end of file
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/amrplusplus_wf.ga	Thu Mar 24 04:16:47 2016 -0400
@@ -0,0 +1,547 @@
+{
+    "a_galaxy_workflow": "true", 
+    "annotation": "", 
+    "format-version": "0.1", 
+    "name": "amrplusplus_wf_pe", 
+    "steps": {
+        "0": {
+            "annotation": "", 
+            "content_id": null, 
+            "id": 0, 
+            "input_connections": {}, 
+            "inputs": [
+                {
+                    "description": "", 
+                    "name": "Input Dataset"
+                }
+            ], 
+            "label": "AMR Database", 
+            "name": "Input dataset", 
+            "outputs": [], 
+            "position": {
+                "left": 200, 
+                "top": 200
+            }, 
+            "tool_errors": null, 
+            "tool_id": null, 
+            "tool_state": "{\"name\": \"Input Dataset\"}", 
+            "tool_version": null, 
+            "type": "data_input", 
+            "uuid": "c33b3302-86dd-4020-920b-e91904994b0b", 
+            "workflow_outputs": []
+        }, 
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+}
\ No newline at end of file
--- a/repository_dependencies.xml	Wed Mar 23 21:49:48 2016 -0400
+++ b/repository_dependencies.xml	Thu Mar 24 04:16:47 2016 -0400
@@ -1,4 +1,4 @@
 <?xml version="1.0"?>
 <repositories description="A meta-package of tools needed to run the amrPlusPlus workflow">
-    <repository changeset_revision="84f9d3911454" name="amrplusplus_suite" owner="chrisd" toolshed="https://toolshed.g2.bx.psu.edu" />
+    <repository changeset_revision="b506e3641805" name="amrplusplus_suite" owner="chrisd" toolshed="https://toolshed.g2.bx.psu.edu" />
 </repositories>