Mercurial > repos > computational-metabolomics > sirius_csifingerid
changeset 7:e29e64ff50bb draft
"planemo upload for repository https://github.com/computational-metabolomics/sirius_csifingerid_galaxy commit a2dd58962ce65259d79c7647efef1f0b18dce48c"
| author | computational-metabolomics |
|---|---|
| date | Thu, 10 Feb 2022 16:05:47 +0000 |
| parents | 96b077221201 |
| children | 7b9c17738db8 |
| files | sirius_csifingerid.py |
| diffstat | 1 files changed, 1 insertions(+), 3 deletions(-) [+] |
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--- a/sirius_csifingerid.py Fri Feb 04 17:13:46 2022 +0000 +++ b/sirius_csifingerid.py Thu Feb 10 16:05:47 2022 +0000 @@ -29,8 +29,6 @@ parser.add_argument('--min_MSMS_peaks', default=1) parser.add_argument('--rank_filter', default=0) parser.add_argument('--confidence_filter', default=0) -parser.add_argument('--backwards_compatible', - default=False, action='store_true') parser.add_argument('--schema', default='msp') parser.add_argument('-a', '--adducts', action='append', nargs=1, required=False, default=[], help='Adducts used') @@ -350,7 +348,7 @@ # before we start merging the files outfiles = [os.path.join(wd, f) for f in # glob.glob(os.path.join(wd, "*_metfrag_result.csv"))] def concat_output(filename, result_pth, - rank_filter, confidence_filter, backwards_compatible): + rank_filter, confidence_filter): outfiles = glob.glob(os.path.join(wd, '*', '*{}'.format(filename))) # sort files nicely