Mercurial > repos > cpt > cpt_gbk_to_5col
comparison cpt_gbk_to_5col/test-data/complex_feature_locs.gbk @ 0:66143811fe8a draft
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| author | cpt |
|---|---|
| date | Fri, 17 Jun 2022 12:45:08 +0000 |
| parents | |
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| -1:000000000000 | 0:66143811fe8a |
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| 1 LOCUS contig00077 300 bp DNA linear 15-MAR-2010 | |
| 2 DEFINITION '[length=22956]' '[numreads=4517 from AU1189;454 Data]'. | |
| 3 ACCESSION | |
| 4 VERSION | |
| 5 KEYWORDS . | |
| 6 SOURCE AU1189 | |
| 7 ORGANISM AU1189 | |
| 8 Unclassified. | |
| 9 REFERENCE 1 (bases 1 to 22956) | |
| 10 AUTHORS Duarte,I. | |
| 11 TITLE contig77 | |
| 12 JOURNAL Unpublished | |
| 13 REFERENCE 2 (bases 1 to 22956) | |
| 14 AUTHORS Duarte,I. | |
| 15 TITLE Direct Submission | |
| 16 JOURNAL Submitted (15-MAR-2010) PLPM, Texas A&M University, 2132 TAMU, | |
| 17 College Station, TX 77840, USA | |
| 18 FEATURES Location/Qualifiers | |
| 19 source 1..22956 | |
| 20 /organism="AU1189" | |
| 21 /mol_type="genomic DNA" | |
| 22 CDS complement(join(11159..11327,11327..11652)) | |
| 23 /note="tapemeasure frameshift chaperone" | |
| 24 /product="P2 E' tapemeasure frameshift chaperone" | |
| 25 /translation="MNPIQSDAAAPDLQADAAAIATPAQDDPATHTLDTPLVRGTQTITSITLRKPKSGELRGV | |
| 26 SLSDLVSLDVVALSKVLPRISSPMLTEADVASIDPADLVQLGGIFAGFFDAEGREIPTGL | |
| 27 PDRVEDPMADIATVFGWTPPVMDAFSLAELMDWRERARVRAGAQ" | |
| 28 /gene="gp14" | |
| 29 CDS complement(join(11409..11600,11600..11900)) | |
| 30 RBS complement(11905..11910) | |
| 31 BASE COUNT 3240 a 7606 c 8254 g 3856 t | |
| 32 ORIGIN | |
| 33 1 agccgggcgc gccaagcctg atcaggctct cagcggtttc ctcccatcgt cgtgcagtac | |
| 34 61 cgttgcagct aaattgcagc cggaatcggc gcgggctcgg ccgtcagcgg cgcgacccat | |
| 35 121 tgcgccagat gcgcggccga cagatgcgcg taccgctgca ccatttccat cgtctcccag | |
| 36 181 ccgcccagct ccttcagcac ctgcagcggc gtgccgcgtt ggacgtgcca gctcgcccag | |
| 37 241 gtgtggcgca ggtcgtgcca gcggaaatcg tgcaggccgg cgcgccgcag cgccttggcc | |
| 38 // |