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annotate cpt_gbk_to_5col/test-data/complex_feature_locs.gbk @ 0:66143811fe8a draft

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author cpt
date Fri, 17 Jun 2022 12:45:08 +0000
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1 LOCUS contig00077 300 bp DNA linear 15-MAR-2010
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2 DEFINITION '[length=22956]' '[numreads=4517 from AU1189;454 Data]'.
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3 ACCESSION
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4 VERSION
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5 KEYWORDS .
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6 SOURCE AU1189
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7 ORGANISM AU1189
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8 Unclassified.
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9 REFERENCE 1 (bases 1 to 22956)
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10 AUTHORS Duarte,I.
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11 TITLE contig77
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12 JOURNAL Unpublished
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13 REFERENCE 2 (bases 1 to 22956)
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14 AUTHORS Duarte,I.
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15 TITLE Direct Submission
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16 JOURNAL Submitted (15-MAR-2010) PLPM, Texas A&M University, 2132 TAMU,
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17 College Station, TX 77840, USA
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18 FEATURES Location/Qualifiers
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19 source 1..22956
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20 /organism="AU1189"
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21 /mol_type="genomic DNA"
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22 CDS complement(join(11159..11327,11327..11652))
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23 /note="tapemeasure frameshift chaperone"
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24 /product="P2 E' tapemeasure frameshift chaperone"
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25 /translation="MNPIQSDAAAPDLQADAAAIATPAQDDPATHTLDTPLVRGTQTITSITLRKPKSGELRGV
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26 SLSDLVSLDVVALSKVLPRISSPMLTEADVASIDPADLVQLGGIFAGFFDAEGREIPTGL
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27 PDRVEDPMADIATVFGWTPPVMDAFSLAELMDWRERARVRAGAQ"
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28 /gene="gp14"
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29 CDS complement(join(11409..11600,11600..11900))
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30 RBS complement(11905..11910)
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31 BASE COUNT 3240 a 7606 c 8254 g 3856 t
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32 ORIGIN
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33 1 agccgggcgc gccaagcctg atcaggctct cagcggtttc ctcccatcgt cgtgcagtac
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34 61 cgttgcagct aaattgcagc cggaatcggc gcgggctcgg ccgtcagcgg cgcgacccat
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35 121 tgcgccagat gcgcggccga cagatgcgcg taccgctgca ccatttccat cgtctcccag
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36 181 ccgcccagct ccttcagcac ctgcagcggc gtgccgcgtt ggacgtgcca gctcgcccag
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37 241 gtgtggcgca ggtcgtgcca gcggaaatcg tgcaggccgg cgcgccgcag cgccttggcc
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38 //