comparison tool_dependencies.xml @ 1:c4ad58c4bc7d draft

Add version_command element. Add test case from Joachim Jacob's blat wrapper: http://testtoolshed.g2.bx.psu.edu/view/joachim-jacob/blat . Add readme section to tool_dependencies.xml .

0:0a71a7d35d09

        <action type="set_environment">
          <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin/`uname -m`</environment_variable>
        </action>
      </actions>
    </install>
  </package>
</tool_dependency>

1:c4ad58c4bc7d

        <action type="set_environment">
          <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin/`uname -m`</environment_variable>
        </action>
      </actions>
    </install>
    <readme>
BLAT sequence aligner from the UCSC: http://genome.ucsc.edu/FAQ/FAQblat.html
Git development repository: http://genome-source.cse.ucsc.edu/gitweb/?p=kent.git

Please note that the BLAT source and executables are freely available for
academic, nonprofit and personal use. Commercial licensing information is
available on the Kent Informatics website (http://www.kentinformatics.com/).
    </readme>
  </package>
</tool_dependency>