Mercurial > repos > crs4 > prokka
changeset 5:b9fea998270a draft
Fix Prokka 1.8 dependency installation.
| author | crs4 |
|---|---|
| date | Thu, 09 Jan 2014 16:49:50 -0500 |
| parents | 5c0030f52b83 |
| children | 3ad7ef0ba385 |
| files | COPYING readme.rst tool_dependencies.xml |
| diffstat | 3 files changed, 3 insertions(+), 2 deletions(-) [+] |
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--- a/COPYING Wed Jan 08 04:29:37 2014 -0500 +++ b/COPYING Thu Jan 09 16:49:50 2014 -0500 @@ -1,4 +1,4 @@ -Copyright © 2013 CRS4 Srl. http://www.crs4.it/ +Copyright © 2013-2014 CRS4 Srl. http://www.crs4.it/ Copyright © 2013 Lionel Guy Created by: Paolo Uva <paolo.uva@crs4.it>
--- a/readme.rst Wed Jan 08 04:29:37 2014 -0500 +++ b/readme.rst Thu Jan 09 16:49:50 2014 -0500 @@ -35,6 +35,7 @@ Version history --------------- +- Release 5 (prokka 1.3.0): Fix Prokka 1.8 dependency installation. - Release 4 (prokka 1.3.0): Support Prokka 1.8. Depend on package_minced_0_1_4 and package_tbl2asn_22_4 (requires Galaxy release_2013.11.04 or later). Update citation. - Release 3 (prokka 1.2.0): Use $GALAXY_SLOTS instead of $PROKKA_SITE_OPTIONS. Upgrade Barrnap dependency to v. 0.3. Upgrade Infernal dependency to v. 1.1. Depend on package_gnu_parallel_20131122 (requires Galaxy release_2013.11.04 or later). - Release 2 (prokka 1.1.0): Merge the wrappers by CRS4 and Lionel Guy. Directly call prokka, remove prokka.py . Add 'locustag', 'increment', 'gffver', 'compliant', 'addgenes', 'genus', 'species', 'strain', 'plasmid', 'gcode', 'usegenus', 'metagenome', 'fast', 'evalue', 'norrna', 'notrna' params. Upgrade BLAST+ dependency to v. 2.2.28. Add dependencies on prodigal and barrnap. Add readme.rst .
--- a/tool_dependencies.xml Wed Jan 08 04:29:37 2014 -0500 +++ b/tool_dependencies.xml Thu Jan 09 16:49:50 2014 -0500 @@ -31,7 +31,7 @@ <install version="1.0"> <actions> <action type="download_by_url">http://www.vicbioinformatics.com/prokka-1.7.tar.gz</action> - <action target_filename="prokka" type="download_file">http://www.vicbioinformatics.com/prokka-1.8</action> + <action target_filename="bin/prokka" type="download_file">http://www.vicbioinformatics.com/prokka-1.8</action> <action type="move_directory_files"> <source_directory>.</source_directory> <destination_directory>$INSTALL_DIR</destination_directory>