comparison examples/Galaxy-Workflow-make6.ga @ 15:981eb8c3a756 default tip

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author davidmurphy
date Sat, 31 Mar 2012 16:07:07 -0400
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14:778f03497adb 15:981eb8c3a756
1 {
2 "a_galaxy_workflow": "true",
3 "annotation": "Creates 6 codon logos, one for each frame and one for each frame of the reverse complement.",
4 "format-version": "0.1",
5 "name": "make6",
6 "steps": {
7 "0": {
8 "annotation": "",
9 "id": 0,
10 "input_connections": {},
11 "inputs": [
12 {
13 "description": "",
14 "name": "Input Dataset"
15 }
16 ],
17 "name": "Input dataset",
18 "outputs": [],
19 "position": {
20 "left": 148,
21 "top": 194.5
22 },
23 "tool_errors": null,
24 "tool_id": null,
25 "tool_state": "{\"name\": \"Input Dataset\"}",
26 "tool_version": null,
27 "type": "data_input",
28 "user_outputs": []
29 },
30 "1": {
31 "annotation": "",
32 "id": 1,
33 "input_connections": {
34 "input": {
35 "id": 0,
36 "output_name": "output"
37 }
38 },
39 "inputs": [],
40 "name": "Codon Logo",
41 "outputs": [
42 {
43 "name": "output",
44 "type": "pdf"
45 }
46 ],
47 "position": {
48 "left": 555.5,
49 "top": 200
50 },
51 "post_job_actions": {},
52 "tool_errors": null,
53 "tool_id": "codonlogo",
54 "tool_state": "{\"outformat\": \"\\\"png\\\"\", \"frame\": \"\\\"0\\\"\", \"size\": \"\\\"large\\\"\", \"__page__\": 0, \"colours\": \"{\\\"colour\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"strict\": \"\\\"False\\\"\", \"logoname\": \"\\\"0 Frame\\\"\", \"ylabel\": \"\\\"\\\"\", \"input\": \"null\", \"stackheight\": \"\\\"100\\\"\", \"scalewidth\": \"\\\"True\\\"\", \"showyaxis\": \"\\\"True\\\"\", \"comp\": \"{\\\"mode\\\": \\\"none\\\", \\\"__current_case__\\\": 2}\", \"showxaxis\": \"\\\"True\\\"\", \"stackwidth\": \"\\\"40.0\\\"\", \"box\": \"\\\"False\\\"\", \"fineprint\": \"\\\"CodonLogo 1.1\\\"\", \"range\": \"{\\\"mode\\\": \\\"complete\\\", \\\"__current_case__\\\": 0}\", \"xlabel\": \"\\\"\\\"\", \"errorbars\": \"\\\"True\\\"\", \"resolution\": \"\\\"96\\\"\", \"stacks\": \"\\\"20\\\"\"}",
55 "tool_version": "3",
56 "type": "tool",
57 "user_outputs": []
58 },
59 "2": {
60 "annotation": "",
61 "id": 2,
62 "input_connections": {
63 "input": {
64 "id": 0,
65 "output_name": "output"
66 }
67 },
68 "inputs": [],
69 "name": "Codon Logo",
70 "outputs": [
71 {
72 "name": "output",
73 "type": "pdf"
74 }
75 ],
76 "position": {
77 "left": 555.5,
78 "top": 281
79 },
80 "post_job_actions": {},
81 "tool_errors": null,
82 "tool_id": "codonlogo",
83 "tool_state": "{\"outformat\": \"\\\"png\\\"\", \"frame\": \"\\\"1\\\"\", \"size\": \"\\\"large\\\"\", \"__page__\": 0, \"colours\": \"{\\\"colour\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"strict\": \"\\\"False\\\"\", \"logoname\": \"\\\"+1 Frame\\\"\", \"ylabel\": \"\\\"\\\"\", \"input\": \"null\", \"stackheight\": \"\\\"100\\\"\", \"scalewidth\": \"\\\"True\\\"\", \"showyaxis\": \"\\\"True\\\"\", \"comp\": \"{\\\"mode\\\": \\\"none\\\", \\\"__current_case__\\\": 2}\", \"showxaxis\": \"\\\"True\\\"\", \"stackwidth\": \"\\\"40.0\\\"\", \"box\": \"\\\"False\\\"\", \"fineprint\": \"\\\"CodonLogo 1.1\\\"\", \"range\": \"{\\\"mode\\\": \\\"complete\\\", \\\"__current_case__\\\": 0}\", \"xlabel\": \"\\\"\\\"\", \"errorbars\": \"\\\"True\\\"\", \"resolution\": \"\\\"96\\\"\", \"stacks\": \"\\\"20\\\"\"}",
84 "tool_version": "3",
85 "type": "tool",
86 "user_outputs": []
87 },
88 "3": {
89 "annotation": "",
90 "id": 3,
91 "input_connections": {
92 "input": {
93 "id": 0,
94 "output_name": "output"
95 }
96 },
97 "inputs": [],
98 "name": "Codon Logo",
99 "outputs": [
100 {
101 "name": "output",
102 "type": "pdf"
103 }
104 ],
105 "position": {
106 "left": 550.5,
107 "top": 362
108 },
109 "post_job_actions": {},
110 "tool_errors": null,
111 "tool_id": "codonlogo",
112 "tool_state": "{\"outformat\": \"\\\"png\\\"\", \"frame\": \"\\\"2\\\"\", \"size\": \"\\\"large\\\"\", \"__page__\": 0, \"colours\": \"{\\\"colour\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"strict\": \"\\\"False\\\"\", \"logoname\": \"\\\"-1 Frame\\\"\", \"ylabel\": \"\\\"\\\"\", \"input\": \"null\", \"stackheight\": \"\\\"100\\\"\", \"scalewidth\": \"\\\"True\\\"\", \"showyaxis\": \"\\\"True\\\"\", \"comp\": \"{\\\"mode\\\": \\\"none\\\", \\\"__current_case__\\\": 2}\", \"showxaxis\": \"\\\"True\\\"\", \"stackwidth\": \"\\\"40.0\\\"\", \"box\": \"\\\"False\\\"\", \"fineprint\": \"\\\"CodonLogo 1.1\\\"\", \"range\": \"{\\\"mode\\\": \\\"complete\\\", \\\"__current_case__\\\": 0}\", \"xlabel\": \"\\\"\\\"\", \"errorbars\": \"\\\"True\\\"\", \"resolution\": \"\\\"96\\\"\", \"stacks\": \"\\\"20\\\"\"}",
113 "tool_version": "3",
114 "type": "tool",
115 "user_outputs": []
116 },
117 "4": {
118 "annotation": "",
119 "id": 4,
120 "input_connections": {
121 "input": {
122 "id": 0,
123 "output_name": "output"
124 }
125 },
126 "inputs": [],
127 "name": "Codon Logo",
128 "outputs": [
129 {
130 "name": "output",
131 "type": "pdf"
132 }
133 ],
134 "position": {
135 "left": 552.5,
136 "top": 452
137 },
138 "post_job_actions": {},
139 "tool_errors": null,
140 "tool_id": "codonlogo",
141 "tool_state": "{\"outformat\": \"\\\"png\\\"\", \"frame\": \"\\\"3\\\"\", \"size\": \"\\\"large\\\"\", \"__page__\": 0, \"colours\": \"{\\\"colour\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"strict\": \"\\\"False\\\"\", \"logoname\": \"\\\"0 Frame Reverse Complement\\\"\", \"ylabel\": \"\\\"\\\"\", \"input\": \"null\", \"stackheight\": \"\\\"100\\\"\", \"scalewidth\": \"\\\"True\\\"\", \"showyaxis\": \"\\\"True\\\"\", \"comp\": \"{\\\"mode\\\": \\\"none\\\", \\\"__current_case__\\\": 2}\", \"showxaxis\": \"\\\"True\\\"\", \"stackwidth\": \"\\\"40.0\\\"\", \"box\": \"\\\"False\\\"\", \"fineprint\": \"\\\"CodonLogo 1.1\\\"\", \"range\": \"{\\\"mode\\\": \\\"complete\\\", \\\"__current_case__\\\": 0}\", \"xlabel\": \"\\\"\\\"\", \"errorbars\": \"\\\"True\\\"\", \"resolution\": \"\\\"96\\\"\", \"stacks\": \"\\\"20\\\"\"}",
142 "tool_version": "3",
143 "type": "tool",
144 "user_outputs": []
145 },
146 "5": {
147 "annotation": "",
148 "id": 5,
149 "input_connections": {
150 "input": {
151 "id": 0,
152 "output_name": "output"
153 }
154 },
155 "inputs": [],
156 "name": "Codon Logo",
157 "outputs": [
158 {
159 "name": "output",
160 "type": "pdf"
161 }
162 ],
163 "position": {
164 "left": 550.5,
165 "top": 549
166 },
167 "post_job_actions": {},
168 "tool_errors": null,
169 "tool_id": "codonlogo",
170 "tool_state": "{\"outformat\": \"\\\"png\\\"\", \"frame\": \"\\\"4\\\"\", \"size\": \"\\\"large\\\"\", \"__page__\": 0, \"colours\": \"{\\\"colour\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"strict\": \"\\\"False\\\"\", \"logoname\": \"\\\"+1 Frame Reverse Complement\\\"\", \"ylabel\": \"\\\"\\\"\", \"input\": \"null\", \"stackheight\": \"\\\"100\\\"\", \"scalewidth\": \"\\\"True\\\"\", \"showyaxis\": \"\\\"True\\\"\", \"comp\": \"{\\\"mode\\\": \\\"none\\\", \\\"__current_case__\\\": 2}\", \"showxaxis\": \"\\\"True\\\"\", \"stackwidth\": \"\\\"40.0\\\"\", \"box\": \"\\\"False\\\"\", \"fineprint\": \"\\\"CodonLogo 1.1\\\"\", \"range\": \"{\\\"mode\\\": \\\"complete\\\", \\\"__current_case__\\\": 0}\", \"xlabel\": \"\\\"\\\"\", \"errorbars\": \"\\\"True\\\"\", \"resolution\": \"\\\"96\\\"\", \"stacks\": \"\\\"20\\\"\"}",
171 "tool_version": "3",
172 "type": "tool",
173 "user_outputs": []
174 },
175 "6": {
176 "annotation": "",
177 "id": 6,
178 "input_connections": {
179 "input": {
180 "id": 0,
181 "output_name": "output"
182 }
183 },
184 "inputs": [],
185 "name": "Codon Logo",
186 "outputs": [
187 {
188 "name": "output",
189 "type": "pdf"
190 }
191 ],
192 "position": {
193 "left": 548.5,
194 "top": 644
195 },
196 "post_job_actions": {},
197 "tool_errors": null,
198 "tool_id": "codonlogo",
199 "tool_state": "{\"outformat\": \"\\\"png\\\"\", \"frame\": \"\\\"5\\\"\", \"size\": \"\\\"large\\\"\", \"__page__\": 0, \"colours\": \"{\\\"colour\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"strict\": \"\\\"False\\\"\", \"logoname\": \"\\\"-1 Frame Reverse Complement\\\"\", \"ylabel\": \"\\\"\\\"\", \"input\": \"null\", \"stackheight\": \"\\\"100\\\"\", \"scalewidth\": \"\\\"True\\\"\", \"showyaxis\": \"\\\"True\\\"\", \"comp\": \"{\\\"mode\\\": \\\"none\\\", \\\"__current_case__\\\": 2}\", \"showxaxis\": \"\\\"True\\\"\", \"stackwidth\": \"\\\"40.0\\\"\", \"box\": \"\\\"False\\\"\", \"fineprint\": \"\\\"CodonLogo 1.1\\\"\", \"range\": \"{\\\"mode\\\": \\\"complete\\\", \\\"__current_case__\\\": 0}\", \"xlabel\": \"\\\"\\\"\", \"errorbars\": \"\\\"True\\\"\", \"resolution\": \"\\\"96\\\"\", \"stacks\": \"\\\"20\\\"\"}",
200 "tool_version": "3",
201 "type": "tool",
202 "user_outputs": []
203 }
204 }
205 }