|
15
|
1 {
|
|
|
2 "a_galaxy_workflow": "true",
|
|
|
3 "annotation": "Creates 6 codon logos, one for each frame and one for each frame of the reverse complement.",
|
|
|
4 "format-version": "0.1",
|
|
|
5 "name": "make6",
|
|
|
6 "steps": {
|
|
|
7 "0": {
|
|
|
8 "annotation": "",
|
|
|
9 "id": 0,
|
|
|
10 "input_connections": {},
|
|
|
11 "inputs": [
|
|
|
12 {
|
|
|
13 "description": "",
|
|
|
14 "name": "Input Dataset"
|
|
|
15 }
|
|
|
16 ],
|
|
|
17 "name": "Input dataset",
|
|
|
18 "outputs": [],
|
|
|
19 "position": {
|
|
|
20 "left": 148,
|
|
|
21 "top": 194.5
|
|
|
22 },
|
|
|
23 "tool_errors": null,
|
|
|
24 "tool_id": null,
|
|
|
25 "tool_state": "{\"name\": \"Input Dataset\"}",
|
|
|
26 "tool_version": null,
|
|
|
27 "type": "data_input",
|
|
|
28 "user_outputs": []
|
|
|
29 },
|
|
|
30 "1": {
|
|
|
31 "annotation": "",
|
|
|
32 "id": 1,
|
|
|
33 "input_connections": {
|
|
|
34 "input": {
|
|
|
35 "id": 0,
|
|
|
36 "output_name": "output"
|
|
|
37 }
|
|
|
38 },
|
|
|
39 "inputs": [],
|
|
|
40 "name": "Codon Logo",
|
|
|
41 "outputs": [
|
|
|
42 {
|
|
|
43 "name": "output",
|
|
|
44 "type": "pdf"
|
|
|
45 }
|
|
|
46 ],
|
|
|
47 "position": {
|
|
|
48 "left": 555.5,
|
|
|
49 "top": 200
|
|
|
50 },
|
|
|
51 "post_job_actions": {},
|
|
|
52 "tool_errors": null,
|
|
|
53 "tool_id": "codonlogo",
|
|
|
54 "tool_state": "{\"outformat\": \"\\\"png\\\"\", \"frame\": \"\\\"0\\\"\", \"size\": \"\\\"large\\\"\", \"__page__\": 0, \"colours\": \"{\\\"colour\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"strict\": \"\\\"False\\\"\", \"logoname\": \"\\\"0 Frame\\\"\", \"ylabel\": \"\\\"\\\"\", \"input\": \"null\", \"stackheight\": \"\\\"100\\\"\", \"scalewidth\": \"\\\"True\\\"\", \"showyaxis\": \"\\\"True\\\"\", \"comp\": \"{\\\"mode\\\": \\\"none\\\", \\\"__current_case__\\\": 2}\", \"showxaxis\": \"\\\"True\\\"\", \"stackwidth\": \"\\\"40.0\\\"\", \"box\": \"\\\"False\\\"\", \"fineprint\": \"\\\"CodonLogo 1.1\\\"\", \"range\": \"{\\\"mode\\\": \\\"complete\\\", \\\"__current_case__\\\": 0}\", \"xlabel\": \"\\\"\\\"\", \"errorbars\": \"\\\"True\\\"\", \"resolution\": \"\\\"96\\\"\", \"stacks\": \"\\\"20\\\"\"}",
|
|
|
55 "tool_version": "3",
|
|
|
56 "type": "tool",
|
|
|
57 "user_outputs": []
|
|
|
58 },
|
|
|
59 "2": {
|
|
|
60 "annotation": "",
|
|
|
61 "id": 2,
|
|
|
62 "input_connections": {
|
|
|
63 "input": {
|
|
|
64 "id": 0,
|
|
|
65 "output_name": "output"
|
|
|
66 }
|
|
|
67 },
|
|
|
68 "inputs": [],
|
|
|
69 "name": "Codon Logo",
|
|
|
70 "outputs": [
|
|
|
71 {
|
|
|
72 "name": "output",
|
|
|
73 "type": "pdf"
|
|
|
74 }
|
|
|
75 ],
|
|
|
76 "position": {
|
|
|
77 "left": 555.5,
|
|
|
78 "top": 281
|
|
|
79 },
|
|
|
80 "post_job_actions": {},
|
|
|
81 "tool_errors": null,
|
|
|
82 "tool_id": "codonlogo",
|
|
|
83 "tool_state": "{\"outformat\": \"\\\"png\\\"\", \"frame\": \"\\\"1\\\"\", \"size\": \"\\\"large\\\"\", \"__page__\": 0, \"colours\": \"{\\\"colour\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"strict\": \"\\\"False\\\"\", \"logoname\": \"\\\"+1 Frame\\\"\", \"ylabel\": \"\\\"\\\"\", \"input\": \"null\", \"stackheight\": \"\\\"100\\\"\", \"scalewidth\": \"\\\"True\\\"\", \"showyaxis\": \"\\\"True\\\"\", \"comp\": \"{\\\"mode\\\": \\\"none\\\", \\\"__current_case__\\\": 2}\", \"showxaxis\": \"\\\"True\\\"\", \"stackwidth\": \"\\\"40.0\\\"\", \"box\": \"\\\"False\\\"\", \"fineprint\": \"\\\"CodonLogo 1.1\\\"\", \"range\": \"{\\\"mode\\\": \\\"complete\\\", \\\"__current_case__\\\": 0}\", \"xlabel\": \"\\\"\\\"\", \"errorbars\": \"\\\"True\\\"\", \"resolution\": \"\\\"96\\\"\", \"stacks\": \"\\\"20\\\"\"}",
|
|
|
84 "tool_version": "3",
|
|
|
85 "type": "tool",
|
|
|
86 "user_outputs": []
|
|
|
87 },
|
|
|
88 "3": {
|
|
|
89 "annotation": "",
|
|
|
90 "id": 3,
|
|
|
91 "input_connections": {
|
|
|
92 "input": {
|
|
|
93 "id": 0,
|
|
|
94 "output_name": "output"
|
|
|
95 }
|
|
|
96 },
|
|
|
97 "inputs": [],
|
|
|
98 "name": "Codon Logo",
|
|
|
99 "outputs": [
|
|
|
100 {
|
|
|
101 "name": "output",
|
|
|
102 "type": "pdf"
|
|
|
103 }
|
|
|
104 ],
|
|
|
105 "position": {
|
|
|
106 "left": 550.5,
|
|
|
107 "top": 362
|
|
|
108 },
|
|
|
109 "post_job_actions": {},
|
|
|
110 "tool_errors": null,
|
|
|
111 "tool_id": "codonlogo",
|
|
|
112 "tool_state": "{\"outformat\": \"\\\"png\\\"\", \"frame\": \"\\\"2\\\"\", \"size\": \"\\\"large\\\"\", \"__page__\": 0, \"colours\": \"{\\\"colour\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"strict\": \"\\\"False\\\"\", \"logoname\": \"\\\"-1 Frame\\\"\", \"ylabel\": \"\\\"\\\"\", \"input\": \"null\", \"stackheight\": \"\\\"100\\\"\", \"scalewidth\": \"\\\"True\\\"\", \"showyaxis\": \"\\\"True\\\"\", \"comp\": \"{\\\"mode\\\": \\\"none\\\", \\\"__current_case__\\\": 2}\", \"showxaxis\": \"\\\"True\\\"\", \"stackwidth\": \"\\\"40.0\\\"\", \"box\": \"\\\"False\\\"\", \"fineprint\": \"\\\"CodonLogo 1.1\\\"\", \"range\": \"{\\\"mode\\\": \\\"complete\\\", \\\"__current_case__\\\": 0}\", \"xlabel\": \"\\\"\\\"\", \"errorbars\": \"\\\"True\\\"\", \"resolution\": \"\\\"96\\\"\", \"stacks\": \"\\\"20\\\"\"}",
|
|
|
113 "tool_version": "3",
|
|
|
114 "type": "tool",
|
|
|
115 "user_outputs": []
|
|
|
116 },
|
|
|
117 "4": {
|
|
|
118 "annotation": "",
|
|
|
119 "id": 4,
|
|
|
120 "input_connections": {
|
|
|
121 "input": {
|
|
|
122 "id": 0,
|
|
|
123 "output_name": "output"
|
|
|
124 }
|
|
|
125 },
|
|
|
126 "inputs": [],
|
|
|
127 "name": "Codon Logo",
|
|
|
128 "outputs": [
|
|
|
129 {
|
|
|
130 "name": "output",
|
|
|
131 "type": "pdf"
|
|
|
132 }
|
|
|
133 ],
|
|
|
134 "position": {
|
|
|
135 "left": 552.5,
|
|
|
136 "top": 452
|
|
|
137 },
|
|
|
138 "post_job_actions": {},
|
|
|
139 "tool_errors": null,
|
|
|
140 "tool_id": "codonlogo",
|
|
|
141 "tool_state": "{\"outformat\": \"\\\"png\\\"\", \"frame\": \"\\\"3\\\"\", \"size\": \"\\\"large\\\"\", \"__page__\": 0, \"colours\": \"{\\\"colour\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"strict\": \"\\\"False\\\"\", \"logoname\": \"\\\"0 Frame Reverse Complement\\\"\", \"ylabel\": \"\\\"\\\"\", \"input\": \"null\", \"stackheight\": \"\\\"100\\\"\", \"scalewidth\": \"\\\"True\\\"\", \"showyaxis\": \"\\\"True\\\"\", \"comp\": \"{\\\"mode\\\": \\\"none\\\", \\\"__current_case__\\\": 2}\", \"showxaxis\": \"\\\"True\\\"\", \"stackwidth\": \"\\\"40.0\\\"\", \"box\": \"\\\"False\\\"\", \"fineprint\": \"\\\"CodonLogo 1.1\\\"\", \"range\": \"{\\\"mode\\\": \\\"complete\\\", \\\"__current_case__\\\": 0}\", \"xlabel\": \"\\\"\\\"\", \"errorbars\": \"\\\"True\\\"\", \"resolution\": \"\\\"96\\\"\", \"stacks\": \"\\\"20\\\"\"}",
|
|
|
142 "tool_version": "3",
|
|
|
143 "type": "tool",
|
|
|
144 "user_outputs": []
|
|
|
145 },
|
|
|
146 "5": {
|
|
|
147 "annotation": "",
|
|
|
148 "id": 5,
|
|
|
149 "input_connections": {
|
|
|
150 "input": {
|
|
|
151 "id": 0,
|
|
|
152 "output_name": "output"
|
|
|
153 }
|
|
|
154 },
|
|
|
155 "inputs": [],
|
|
|
156 "name": "Codon Logo",
|
|
|
157 "outputs": [
|
|
|
158 {
|
|
|
159 "name": "output",
|
|
|
160 "type": "pdf"
|
|
|
161 }
|
|
|
162 ],
|
|
|
163 "position": {
|
|
|
164 "left": 550.5,
|
|
|
165 "top": 549
|
|
|
166 },
|
|
|
167 "post_job_actions": {},
|
|
|
168 "tool_errors": null,
|
|
|
169 "tool_id": "codonlogo",
|
|
|
170 "tool_state": "{\"outformat\": \"\\\"png\\\"\", \"frame\": \"\\\"4\\\"\", \"size\": \"\\\"large\\\"\", \"__page__\": 0, \"colours\": \"{\\\"colour\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"strict\": \"\\\"False\\\"\", \"logoname\": \"\\\"+1 Frame Reverse Complement\\\"\", \"ylabel\": \"\\\"\\\"\", \"input\": \"null\", \"stackheight\": \"\\\"100\\\"\", \"scalewidth\": \"\\\"True\\\"\", \"showyaxis\": \"\\\"True\\\"\", \"comp\": \"{\\\"mode\\\": \\\"none\\\", \\\"__current_case__\\\": 2}\", \"showxaxis\": \"\\\"True\\\"\", \"stackwidth\": \"\\\"40.0\\\"\", \"box\": \"\\\"False\\\"\", \"fineprint\": \"\\\"CodonLogo 1.1\\\"\", \"range\": \"{\\\"mode\\\": \\\"complete\\\", \\\"__current_case__\\\": 0}\", \"xlabel\": \"\\\"\\\"\", \"errorbars\": \"\\\"True\\\"\", \"resolution\": \"\\\"96\\\"\", \"stacks\": \"\\\"20\\\"\"}",
|
|
|
171 "tool_version": "3",
|
|
|
172 "type": "tool",
|
|
|
173 "user_outputs": []
|
|
|
174 },
|
|
|
175 "6": {
|
|
|
176 "annotation": "",
|
|
|
177 "id": 6,
|
|
|
178 "input_connections": {
|
|
|
179 "input": {
|
|
|
180 "id": 0,
|
|
|
181 "output_name": "output"
|
|
|
182 }
|
|
|
183 },
|
|
|
184 "inputs": [],
|
|
|
185 "name": "Codon Logo",
|
|
|
186 "outputs": [
|
|
|
187 {
|
|
|
188 "name": "output",
|
|
|
189 "type": "pdf"
|
|
|
190 }
|
|
|
191 ],
|
|
|
192 "position": {
|
|
|
193 "left": 548.5,
|
|
|
194 "top": 644
|
|
|
195 },
|
|
|
196 "post_job_actions": {},
|
|
|
197 "tool_errors": null,
|
|
|
198 "tool_id": "codonlogo",
|
|
|
199 "tool_state": "{\"outformat\": \"\\\"png\\\"\", \"frame\": \"\\\"5\\\"\", \"size\": \"\\\"large\\\"\", \"__page__\": 0, \"colours\": \"{\\\"colour\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"strict\": \"\\\"False\\\"\", \"logoname\": \"\\\"-1 Frame Reverse Complement\\\"\", \"ylabel\": \"\\\"\\\"\", \"input\": \"null\", \"stackheight\": \"\\\"100\\\"\", \"scalewidth\": \"\\\"True\\\"\", \"showyaxis\": \"\\\"True\\\"\", \"comp\": \"{\\\"mode\\\": \\\"none\\\", \\\"__current_case__\\\": 2}\", \"showxaxis\": \"\\\"True\\\"\", \"stackwidth\": \"\\\"40.0\\\"\", \"box\": \"\\\"False\\\"\", \"fineprint\": \"\\\"CodonLogo 1.1\\\"\", \"range\": \"{\\\"mode\\\": \\\"complete\\\", \\\"__current_case__\\\": 0}\", \"xlabel\": \"\\\"\\\"\", \"errorbars\": \"\\\"True\\\"\", \"resolution\": \"\\\"96\\\"\", \"stacks\": \"\\\"20\\\"\"}",
|
|
|
200 "tool_version": "3",
|
|
|
201 "type": "tool",
|
|
|
202 "user_outputs": []
|
|
|
203 }
|
|
|
204 }
|
|
|
205 } |
