view examples/Galaxy-Workflow-make6.ga @ 15:981eb8c3a756 default tip

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author davidmurphy
date Sat, 31 Mar 2012 16:07:07 -0400
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{
    "a_galaxy_workflow": "true", 
    "annotation": "Creates 6 codon logos, one for each frame and one for each frame of the reverse complement.", 
    "format-version": "0.1", 
    "name": "make6", 
    "steps": {
        "0": {
            "annotation": "", 
            "id": 0, 
            "input_connections": {}, 
            "inputs": [
                {
                    "description": "", 
                    "name": "Input Dataset"
                }
            ], 
            "name": "Input dataset", 
            "outputs": [], 
            "position": {
                "left": 148, 
                "top": 194.5
            }, 
            "tool_errors": null, 
            "tool_id": null, 
            "tool_state": "{\"name\": \"Input Dataset\"}", 
            "tool_version": null, 
            "type": "data_input", 
            "user_outputs": []
        }, 
        "1": {
            "annotation": "", 
            "id": 1, 
            "input_connections": {
                "input": {
                    "id": 0, 
                    "output_name": "output"
                }
            }, 
            "inputs": [], 
            "name": "Codon Logo", 
            "outputs": [
                {
                    "name": "output", 
                    "type": "pdf"
                }
            ], 
            "position": {
                "left": 555.5, 
                "top": 200
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "codonlogo", 
            "tool_state": "{\"outformat\": \"\\\"png\\\"\", \"frame\": \"\\\"0\\\"\", \"size\": \"\\\"large\\\"\", \"__page__\": 0, \"colours\": \"{\\\"colour\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"strict\": \"\\\"False\\\"\", \"logoname\": \"\\\"0 Frame\\\"\", \"ylabel\": \"\\\"\\\"\", \"input\": \"null\", \"stackheight\": \"\\\"100\\\"\", \"scalewidth\": \"\\\"True\\\"\", \"showyaxis\": \"\\\"True\\\"\", \"comp\": \"{\\\"mode\\\": \\\"none\\\", \\\"__current_case__\\\": 2}\", \"showxaxis\": \"\\\"True\\\"\", \"stackwidth\": \"\\\"40.0\\\"\", \"box\": \"\\\"False\\\"\", \"fineprint\": \"\\\"CodonLogo 1.1\\\"\", \"range\": \"{\\\"mode\\\": \\\"complete\\\", \\\"__current_case__\\\": 0}\", \"xlabel\": \"\\\"\\\"\", \"errorbars\": \"\\\"True\\\"\", \"resolution\": \"\\\"96\\\"\", \"stacks\": \"\\\"20\\\"\"}", 
            "tool_version": "3", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "2": {
            "annotation": "", 
            "id": 2, 
            "input_connections": {
                "input": {
                    "id": 0, 
                    "output_name": "output"
                }
            }, 
            "inputs": [], 
            "name": "Codon Logo", 
            "outputs": [
                {
                    "name": "output", 
                    "type": "pdf"
                }
            ], 
            "position": {
                "left": 555.5, 
                "top": 281
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "codonlogo", 
            "tool_state": "{\"outformat\": \"\\\"png\\\"\", \"frame\": \"\\\"1\\\"\", \"size\": \"\\\"large\\\"\", \"__page__\": 0, \"colours\": \"{\\\"colour\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"strict\": \"\\\"False\\\"\", \"logoname\": \"\\\"+1 Frame\\\"\", \"ylabel\": \"\\\"\\\"\", \"input\": \"null\", \"stackheight\": \"\\\"100\\\"\", \"scalewidth\": \"\\\"True\\\"\", \"showyaxis\": \"\\\"True\\\"\", \"comp\": \"{\\\"mode\\\": \\\"none\\\", \\\"__current_case__\\\": 2}\", \"showxaxis\": \"\\\"True\\\"\", \"stackwidth\": \"\\\"40.0\\\"\", \"box\": \"\\\"False\\\"\", \"fineprint\": \"\\\"CodonLogo 1.1\\\"\", \"range\": \"{\\\"mode\\\": \\\"complete\\\", \\\"__current_case__\\\": 0}\", \"xlabel\": \"\\\"\\\"\", \"errorbars\": \"\\\"True\\\"\", \"resolution\": \"\\\"96\\\"\", \"stacks\": \"\\\"20\\\"\"}", 
            "tool_version": "3", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "3": {
            "annotation": "", 
            "id": 3, 
            "input_connections": {
                "input": {
                    "id": 0, 
                    "output_name": "output"
                }
            }, 
            "inputs": [], 
            "name": "Codon Logo", 
            "outputs": [
                {
                    "name": "output", 
                    "type": "pdf"
                }
            ], 
            "position": {
                "left": 550.5, 
                "top": 362
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "codonlogo", 
            "tool_state": "{\"outformat\": \"\\\"png\\\"\", \"frame\": \"\\\"2\\\"\", \"size\": \"\\\"large\\\"\", \"__page__\": 0, \"colours\": \"{\\\"colour\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"strict\": \"\\\"False\\\"\", \"logoname\": \"\\\"-1 Frame\\\"\", \"ylabel\": \"\\\"\\\"\", \"input\": \"null\", \"stackheight\": \"\\\"100\\\"\", \"scalewidth\": \"\\\"True\\\"\", \"showyaxis\": \"\\\"True\\\"\", \"comp\": \"{\\\"mode\\\": \\\"none\\\", \\\"__current_case__\\\": 2}\", \"showxaxis\": \"\\\"True\\\"\", \"stackwidth\": \"\\\"40.0\\\"\", \"box\": \"\\\"False\\\"\", \"fineprint\": \"\\\"CodonLogo 1.1\\\"\", \"range\": \"{\\\"mode\\\": \\\"complete\\\", \\\"__current_case__\\\": 0}\", \"xlabel\": \"\\\"\\\"\", \"errorbars\": \"\\\"True\\\"\", \"resolution\": \"\\\"96\\\"\", \"stacks\": \"\\\"20\\\"\"}", 
            "tool_version": "3", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "4": {
            "annotation": "", 
            "id": 4, 
            "input_connections": {
                "input": {
                    "id": 0, 
                    "output_name": "output"
                }
            }, 
            "inputs": [], 
            "name": "Codon Logo", 
            "outputs": [
                {
                    "name": "output", 
                    "type": "pdf"
                }
            ], 
            "position": {
                "left": 552.5, 
                "top": 452
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "codonlogo", 
            "tool_state": "{\"outformat\": \"\\\"png\\\"\", \"frame\": \"\\\"3\\\"\", \"size\": \"\\\"large\\\"\", \"__page__\": 0, \"colours\": \"{\\\"colour\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"strict\": \"\\\"False\\\"\", \"logoname\": \"\\\"0 Frame Reverse Complement\\\"\", \"ylabel\": \"\\\"\\\"\", \"input\": \"null\", \"stackheight\": \"\\\"100\\\"\", \"scalewidth\": \"\\\"True\\\"\", \"showyaxis\": \"\\\"True\\\"\", \"comp\": \"{\\\"mode\\\": \\\"none\\\", \\\"__current_case__\\\": 2}\", \"showxaxis\": \"\\\"True\\\"\", \"stackwidth\": \"\\\"40.0\\\"\", \"box\": \"\\\"False\\\"\", \"fineprint\": \"\\\"CodonLogo 1.1\\\"\", \"range\": \"{\\\"mode\\\": \\\"complete\\\", \\\"__current_case__\\\": 0}\", \"xlabel\": \"\\\"\\\"\", \"errorbars\": \"\\\"True\\\"\", \"resolution\": \"\\\"96\\\"\", \"stacks\": \"\\\"20\\\"\"}", 
            "tool_version": "3", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "5": {
            "annotation": "", 
            "id": 5, 
            "input_connections": {
                "input": {
                    "id": 0, 
                    "output_name": "output"
                }
            }, 
            "inputs": [], 
            "name": "Codon Logo", 
            "outputs": [
                {
                    "name": "output", 
                    "type": "pdf"
                }
            ], 
            "position": {
                "left": 550.5, 
                "top": 549
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "codonlogo", 
            "tool_state": "{\"outformat\": \"\\\"png\\\"\", \"frame\": \"\\\"4\\\"\", \"size\": \"\\\"large\\\"\", \"__page__\": 0, \"colours\": \"{\\\"colour\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"strict\": \"\\\"False\\\"\", \"logoname\": \"\\\"+1 Frame Reverse Complement\\\"\", \"ylabel\": \"\\\"\\\"\", \"input\": \"null\", \"stackheight\": \"\\\"100\\\"\", \"scalewidth\": \"\\\"True\\\"\", \"showyaxis\": \"\\\"True\\\"\", \"comp\": \"{\\\"mode\\\": \\\"none\\\", \\\"__current_case__\\\": 2}\", \"showxaxis\": \"\\\"True\\\"\", \"stackwidth\": \"\\\"40.0\\\"\", \"box\": \"\\\"False\\\"\", \"fineprint\": \"\\\"CodonLogo 1.1\\\"\", \"range\": \"{\\\"mode\\\": \\\"complete\\\", \\\"__current_case__\\\": 0}\", \"xlabel\": \"\\\"\\\"\", \"errorbars\": \"\\\"True\\\"\", \"resolution\": \"\\\"96\\\"\", \"stacks\": \"\\\"20\\\"\"}", 
            "tool_version": "3", 
            "type": "tool", 
            "user_outputs": []
        }, 
        "6": {
            "annotation": "", 
            "id": 6, 
            "input_connections": {
                "input": {
                    "id": 0, 
                    "output_name": "output"
                }
            }, 
            "inputs": [], 
            "name": "Codon Logo", 
            "outputs": [
                {
                    "name": "output", 
                    "type": "pdf"
                }
            ], 
            "position": {
                "left": 548.5, 
                "top": 644
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "codonlogo", 
            "tool_state": "{\"outformat\": \"\\\"png\\\"\", \"frame\": \"\\\"5\\\"\", \"size\": \"\\\"large\\\"\", \"__page__\": 0, \"colours\": \"{\\\"colour\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"strict\": \"\\\"False\\\"\", \"logoname\": \"\\\"-1 Frame Reverse Complement\\\"\", \"ylabel\": \"\\\"\\\"\", \"input\": \"null\", \"stackheight\": \"\\\"100\\\"\", \"scalewidth\": \"\\\"True\\\"\", \"showyaxis\": \"\\\"True\\\"\", \"comp\": \"{\\\"mode\\\": \\\"none\\\", \\\"__current_case__\\\": 2}\", \"showxaxis\": \"\\\"True\\\"\", \"stackwidth\": \"\\\"40.0\\\"\", \"box\": \"\\\"False\\\"\", \"fineprint\": \"\\\"CodonLogo 1.1\\\"\", \"range\": \"{\\\"mode\\\": \\\"complete\\\", \\\"__current_case__\\\": 0}\", \"xlabel\": \"\\\"\\\"\", \"errorbars\": \"\\\"True\\\"\", \"resolution\": \"\\\"96\\\"\", \"stacks\": \"\\\"20\\\"\"}", 
            "tool_version": "3", 
            "type": "tool", 
            "user_outputs": []
        }
    }
}