Mercurial > repos > davidmurphy > codonlogo
view examples/Galaxy-Workflow-make6.ga @ 15:981eb8c3a756 default tip
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author | davidmurphy |
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date | Sat, 31 Mar 2012 16:07:07 -0400 |
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{ "a_galaxy_workflow": "true", "annotation": "Creates 6 codon logos, one for each frame and one for each frame of the reverse complement.", "format-version": "0.1", "name": "make6", "steps": { "0": { "annotation": "", "id": 0, "input_connections": {}, "inputs": [ { "description": "", "name": "Input Dataset" } ], "name": "Input dataset", "outputs": [], "position": { "left": 148, "top": 194.5 }, "tool_errors": null, "tool_id": null, "tool_state": "{\"name\": \"Input Dataset\"}", "tool_version": null, "type": "data_input", "user_outputs": [] }, "1": { "annotation": "", "id": 1, "input_connections": { "input": { "id": 0, "output_name": "output" } }, "inputs": [], "name": "Codon Logo", "outputs": [ { "name": "output", "type": "pdf" } ], "position": { "left": 555.5, "top": 200 }, "post_job_actions": {}, "tool_errors": null, "tool_id": "codonlogo", "tool_state": "{\"outformat\": \"\\\"png\\\"\", \"frame\": \"\\\"0\\\"\", \"size\": \"\\\"large\\\"\", \"__page__\": 0, \"colours\": \"{\\\"colour\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"strict\": \"\\\"False\\\"\", \"logoname\": \"\\\"0 Frame\\\"\", \"ylabel\": \"\\\"\\\"\", \"input\": \"null\", \"stackheight\": \"\\\"100\\\"\", \"scalewidth\": \"\\\"True\\\"\", \"showyaxis\": \"\\\"True\\\"\", \"comp\": \"{\\\"mode\\\": \\\"none\\\", \\\"__current_case__\\\": 2}\", \"showxaxis\": \"\\\"True\\\"\", \"stackwidth\": \"\\\"40.0\\\"\", \"box\": \"\\\"False\\\"\", \"fineprint\": \"\\\"CodonLogo 1.1\\\"\", \"range\": \"{\\\"mode\\\": \\\"complete\\\", \\\"__current_case__\\\": 0}\", \"xlabel\": \"\\\"\\\"\", \"errorbars\": \"\\\"True\\\"\", \"resolution\": \"\\\"96\\\"\", \"stacks\": \"\\\"20\\\"\"}", "tool_version": "3", "type": "tool", "user_outputs": [] }, "2": { "annotation": "", "id": 2, "input_connections": { "input": { "id": 0, "output_name": "output" } }, "inputs": [], "name": "Codon Logo", "outputs": [ { "name": "output", "type": "pdf" } ], "position": { "left": 555.5, "top": 281 }, "post_job_actions": {}, "tool_errors": null, "tool_id": "codonlogo", "tool_state": "{\"outformat\": \"\\\"png\\\"\", \"frame\": \"\\\"1\\\"\", \"size\": \"\\\"large\\\"\", \"__page__\": 0, \"colours\": \"{\\\"colour\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"strict\": \"\\\"False\\\"\", \"logoname\": \"\\\"+1 Frame\\\"\", \"ylabel\": \"\\\"\\\"\", \"input\": \"null\", \"stackheight\": \"\\\"100\\\"\", \"scalewidth\": \"\\\"True\\\"\", \"showyaxis\": \"\\\"True\\\"\", \"comp\": \"{\\\"mode\\\": \\\"none\\\", \\\"__current_case__\\\": 2}\", \"showxaxis\": \"\\\"True\\\"\", \"stackwidth\": \"\\\"40.0\\\"\", \"box\": \"\\\"False\\\"\", \"fineprint\": \"\\\"CodonLogo 1.1\\\"\", \"range\": \"{\\\"mode\\\": \\\"complete\\\", \\\"__current_case__\\\": 0}\", \"xlabel\": \"\\\"\\\"\", \"errorbars\": \"\\\"True\\\"\", \"resolution\": \"\\\"96\\\"\", \"stacks\": \"\\\"20\\\"\"}", "tool_version": "3", "type": "tool", "user_outputs": [] }, "3": { "annotation": "", "id": 3, "input_connections": { "input": { "id": 0, "output_name": "output" } }, "inputs": [], "name": "Codon Logo", "outputs": [ { "name": "output", "type": "pdf" } ], "position": { "left": 550.5, "top": 362 }, "post_job_actions": {}, "tool_errors": null, "tool_id": "codonlogo", "tool_state": "{\"outformat\": \"\\\"png\\\"\", \"frame\": \"\\\"2\\\"\", \"size\": \"\\\"large\\\"\", \"__page__\": 0, \"colours\": \"{\\\"colour\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"strict\": \"\\\"False\\\"\", \"logoname\": \"\\\"-1 Frame\\\"\", \"ylabel\": \"\\\"\\\"\", \"input\": \"null\", \"stackheight\": \"\\\"100\\\"\", \"scalewidth\": \"\\\"True\\\"\", \"showyaxis\": \"\\\"True\\\"\", \"comp\": \"{\\\"mode\\\": \\\"none\\\", \\\"__current_case__\\\": 2}\", \"showxaxis\": \"\\\"True\\\"\", \"stackwidth\": \"\\\"40.0\\\"\", \"box\": \"\\\"False\\\"\", \"fineprint\": \"\\\"CodonLogo 1.1\\\"\", \"range\": \"{\\\"mode\\\": \\\"complete\\\", \\\"__current_case__\\\": 0}\", \"xlabel\": \"\\\"\\\"\", \"errorbars\": \"\\\"True\\\"\", \"resolution\": \"\\\"96\\\"\", \"stacks\": \"\\\"20\\\"\"}", "tool_version": "3", "type": "tool", "user_outputs": [] }, "4": { "annotation": "", "id": 4, "input_connections": { "input": { "id": 0, "output_name": "output" } }, "inputs": [], "name": "Codon Logo", "outputs": [ { "name": "output", "type": "pdf" } ], "position": { "left": 552.5, "top": 452 }, "post_job_actions": {}, "tool_errors": null, "tool_id": "codonlogo", "tool_state": "{\"outformat\": \"\\\"png\\\"\", \"frame\": \"\\\"3\\\"\", \"size\": \"\\\"large\\\"\", \"__page__\": 0, \"colours\": \"{\\\"colour\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"strict\": \"\\\"False\\\"\", \"logoname\": \"\\\"0 Frame Reverse Complement\\\"\", \"ylabel\": \"\\\"\\\"\", \"input\": \"null\", \"stackheight\": \"\\\"100\\\"\", \"scalewidth\": \"\\\"True\\\"\", \"showyaxis\": \"\\\"True\\\"\", \"comp\": \"{\\\"mode\\\": \\\"none\\\", \\\"__current_case__\\\": 2}\", \"showxaxis\": \"\\\"True\\\"\", \"stackwidth\": \"\\\"40.0\\\"\", \"box\": \"\\\"False\\\"\", \"fineprint\": \"\\\"CodonLogo 1.1\\\"\", \"range\": \"{\\\"mode\\\": \\\"complete\\\", \\\"__current_case__\\\": 0}\", \"xlabel\": \"\\\"\\\"\", \"errorbars\": \"\\\"True\\\"\", \"resolution\": \"\\\"96\\\"\", \"stacks\": \"\\\"20\\\"\"}", "tool_version": "3", "type": "tool", "user_outputs": [] }, "5": { "annotation": "", "id": 5, "input_connections": { "input": { "id": 0, "output_name": "output" } }, "inputs": [], "name": "Codon Logo", "outputs": [ { "name": "output", "type": "pdf" } ], "position": { "left": 550.5, "top": 549 }, "post_job_actions": {}, "tool_errors": null, "tool_id": "codonlogo", "tool_state": "{\"outformat\": \"\\\"png\\\"\", \"frame\": \"\\\"4\\\"\", \"size\": \"\\\"large\\\"\", \"__page__\": 0, \"colours\": \"{\\\"colour\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"strict\": \"\\\"False\\\"\", \"logoname\": \"\\\"+1 Frame Reverse Complement\\\"\", \"ylabel\": \"\\\"\\\"\", \"input\": \"null\", \"stackheight\": \"\\\"100\\\"\", \"scalewidth\": \"\\\"True\\\"\", \"showyaxis\": \"\\\"True\\\"\", \"comp\": \"{\\\"mode\\\": \\\"none\\\", \\\"__current_case__\\\": 2}\", \"showxaxis\": \"\\\"True\\\"\", \"stackwidth\": \"\\\"40.0\\\"\", \"box\": \"\\\"False\\\"\", \"fineprint\": \"\\\"CodonLogo 1.1\\\"\", \"range\": \"{\\\"mode\\\": \\\"complete\\\", \\\"__current_case__\\\": 0}\", \"xlabel\": \"\\\"\\\"\", \"errorbars\": \"\\\"True\\\"\", \"resolution\": \"\\\"96\\\"\", \"stacks\": \"\\\"20\\\"\"}", "tool_version": "3", "type": "tool", "user_outputs": [] }, "6": { "annotation": "", "id": 6, "input_connections": { "input": { "id": 0, "output_name": "output" } }, "inputs": [], "name": "Codon Logo", "outputs": [ { "name": "output", "type": "pdf" } ], "position": { "left": 548.5, "top": 644 }, "post_job_actions": {}, "tool_errors": null, "tool_id": "codonlogo", "tool_state": "{\"outformat\": \"\\\"png\\\"\", \"frame\": \"\\\"5\\\"\", \"size\": \"\\\"large\\\"\", \"__page__\": 0, \"colours\": \"{\\\"colour\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"strict\": \"\\\"False\\\"\", \"logoname\": \"\\\"-1 Frame Reverse Complement\\\"\", \"ylabel\": \"\\\"\\\"\", \"input\": \"null\", \"stackheight\": \"\\\"100\\\"\", \"scalewidth\": \"\\\"True\\\"\", \"showyaxis\": \"\\\"True\\\"\", \"comp\": \"{\\\"mode\\\": \\\"none\\\", \\\"__current_case__\\\": 2}\", \"showxaxis\": \"\\\"True\\\"\", \"stackwidth\": \"\\\"40.0\\\"\", \"box\": \"\\\"False\\\"\", \"fineprint\": \"\\\"CodonLogo 1.1\\\"\", \"range\": \"{\\\"mode\\\": \\\"complete\\\", \\\"__current_case__\\\": 0}\", \"xlabel\": \"\\\"\\\"\", \"errorbars\": \"\\\"True\\\"\", \"resolution\": \"\\\"96\\\"\", \"stacks\": \"\\\"20\\\"\"}", "tool_version": "3", "type": "tool", "user_outputs": [] } } }