comparison srf2fastq/io_lib-1.12.2/progs/Makefile.in @ 0:d901c9f41a6a default tip

Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
author dawe
date Tue, 07 Jun 2011 17:48:05 -0400
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:d901c9f41a6a
1 # Makefile.in generated by automake 1.9.6 from Makefile.am.
2 # @configure_input@
3
4 # Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
5 # 2003, 2004, 2005 Free Software Foundation, Inc.
6 # This Makefile.in is free software; the Free Software Foundation
7 # gives unlimited permission to copy and/or distribute it,
8 # with or without modifications, as long as this notice is preserved.
9
10 # This program is distributed in the hope that it will be useful,
11 # but WITHOUT ANY WARRANTY, to the extent permitted by law; without
12 # even the implied warranty of MERCHANTABILITY or FITNESS FOR A
13 # PARTICULAR PURPOSE.
14
15 @SET_MAKE@
16
17 srcdir = @srcdir@
18 top_srcdir = @top_srcdir@
19 VPATH = @srcdir@
20 pkgdatadir = $(datadir)/@PACKAGE@
21 pkglibdir = $(libdir)/@PACKAGE@
22 pkgincludedir = $(includedir)/@PACKAGE@
23 top_builddir = ..
24 am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
25 INSTALL = @INSTALL@
26 install_sh_DATA = $(install_sh) -c -m 644
27 install_sh_PROGRAM = $(install_sh) -c
28 install_sh_SCRIPT = $(install_sh) -c
29 INSTALL_HEADER = $(INSTALL_DATA)
30 transform = $(program_transform_name)
31 NORMAL_INSTALL = :
32 PRE_INSTALL = :
33 POST_INSTALL = :
34 NORMAL_UNINSTALL = :
35 PRE_UNINSTALL = :
36 POST_UNINSTALL = :
37 build_triplet = @build@
38 host_triplet = @host@
39 bin_PROGRAMS = convert_trace$(EXEEXT) makeSCF$(EXEEXT) \
40 extract_seq$(EXEEXT) extract_qual$(EXEEXT) \
41 extract_fastq$(EXEEXT) index_tar$(EXEEXT) scf_dump$(EXEEXT) \
42 scf_info$(EXEEXT) scf_update$(EXEEXT) get_comment$(EXEEXT) \
43 hash_tar$(EXEEXT) hash_extract$(EXEEXT) hash_list$(EXEEXT) \
44 trace_dump$(EXEEXT) hash_sff$(EXEEXT) append_sff$(EXEEXT) \
45 ztr_dump$(EXEEXT) srf_dump_all$(EXEEXT) \
46 srf_index_hash$(EXEEXT) srf_extract_linear$(EXEEXT) \
47 srf_extract_hash$(EXEEXT) srf2fastq$(EXEEXT) \
48 srf2fasta$(EXEEXT) srf_filter$(EXEEXT) srf_info$(EXEEXT) \
49 srf_list$(EXEEXT)
50 subdir = progs
51 DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
52 ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
53 am__aclocal_m4_deps = $(top_srcdir)/acinclude.m4 \
54 $(top_srcdir)/configure.in
55 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
56 $(ACLOCAL_M4)
57 mkinstalldirs = $(install_sh) -d
58 CONFIG_HEADER = $(top_builddir)/io_lib_config.h
59 CONFIG_CLEAN_FILES =
60 am__installdirs = "$(DESTDIR)$(bindir)"
61 binPROGRAMS_INSTALL = $(INSTALL_PROGRAM)
62 PROGRAMS = $(bin_PROGRAMS)
63 am_append_sff_OBJECTS = append_sff.$(OBJEXT)
64 append_sff_OBJECTS = $(am_append_sff_OBJECTS)
65 append_sff_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la
66 am_convert_trace_OBJECTS = convert_trace.$(OBJEXT)
67 convert_trace_OBJECTS = $(am_convert_trace_OBJECTS)
68 convert_trace_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la
69 am_extract_fastq_OBJECTS = extract_fastq.$(OBJEXT)
70 extract_fastq_OBJECTS = $(am_extract_fastq_OBJECTS)
71 extract_fastq_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la
72 am_extract_qual_OBJECTS = extract_qual.$(OBJEXT)
73 extract_qual_OBJECTS = $(am_extract_qual_OBJECTS)
74 extract_qual_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la
75 am_extract_seq_OBJECTS = extract_seq.$(OBJEXT)
76 extract_seq_OBJECTS = $(am_extract_seq_OBJECTS)
77 extract_seq_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la
78 am_get_comment_OBJECTS = get_comment.$(OBJEXT)
79 get_comment_OBJECTS = $(am_get_comment_OBJECTS)
80 get_comment_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la
81 am_hash_extract_OBJECTS = hash_extract.$(OBJEXT)
82 hash_extract_OBJECTS = $(am_hash_extract_OBJECTS)
83 hash_extract_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la
84 am_hash_list_OBJECTS = hash_list.$(OBJEXT)
85 hash_list_OBJECTS = $(am_hash_list_OBJECTS)
86 hash_list_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la
87 am_hash_sff_OBJECTS = hash_sff.$(OBJEXT)
88 hash_sff_OBJECTS = $(am_hash_sff_OBJECTS)
89 hash_sff_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la
90 am_hash_tar_OBJECTS = hash_tar.$(OBJEXT)
91 hash_tar_OBJECTS = $(am_hash_tar_OBJECTS)
92 hash_tar_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la
93 am_index_tar_OBJECTS = index_tar.$(OBJEXT)
94 index_tar_OBJECTS = $(am_index_tar_OBJECTS)
95 index_tar_LDADD = $(LDADD)
96 am_makeSCF_OBJECTS = makeSCF.$(OBJEXT)
97 makeSCF_OBJECTS = $(am_makeSCF_OBJECTS)
98 makeSCF_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la
99 am_scf_dump_OBJECTS = scf_dump.$(OBJEXT)
100 scf_dump_OBJECTS = $(am_scf_dump_OBJECTS)
101 scf_dump_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la
102 am_scf_info_OBJECTS = scf_info.$(OBJEXT)
103 scf_info_OBJECTS = $(am_scf_info_OBJECTS)
104 scf_info_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la
105 am_scf_update_OBJECTS = scf_update.$(OBJEXT)
106 scf_update_OBJECTS = $(am_scf_update_OBJECTS)
107 scf_update_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la
108 am_srf2fasta_OBJECTS = srf2fasta.$(OBJEXT)
109 srf2fasta_OBJECTS = $(am_srf2fasta_OBJECTS)
110 srf2fasta_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la
111 am_srf2fastq_OBJECTS = srf2fastq.$(OBJEXT)
112 srf2fastq_OBJECTS = $(am_srf2fastq_OBJECTS)
113 srf2fastq_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la
114 am_srf_dump_all_OBJECTS = srf_dump_all.$(OBJEXT)
115 srf_dump_all_OBJECTS = $(am_srf_dump_all_OBJECTS)
116 srf_dump_all_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la
117 am_srf_extract_hash_OBJECTS = srf_extract_hash.$(OBJEXT)
118 srf_extract_hash_OBJECTS = $(am_srf_extract_hash_OBJECTS)
119 srf_extract_hash_DEPENDENCIES = \
120 $(top_builddir)/io_lib/libstaden-read.la
121 am_srf_extract_linear_OBJECTS = srf_extract_linear.$(OBJEXT)
122 srf_extract_linear_OBJECTS = $(am_srf_extract_linear_OBJECTS)
123 srf_extract_linear_DEPENDENCIES = \
124 $(top_builddir)/io_lib/libstaden-read.la
125 am_srf_filter_OBJECTS = srf_filter.$(OBJEXT)
126 srf_filter_OBJECTS = $(am_srf_filter_OBJECTS)
127 srf_filter_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la
128 am_srf_index_hash_OBJECTS = srf_index_hash.$(OBJEXT)
129 srf_index_hash_OBJECTS = $(am_srf_index_hash_OBJECTS)
130 srf_index_hash_DEPENDENCIES = \
131 $(top_builddir)/io_lib/libstaden-read.la
132 am_srf_info_OBJECTS = srf_info.$(OBJEXT)
133 srf_info_OBJECTS = $(am_srf_info_OBJECTS)
134 srf_info_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la
135 am_srf_list_OBJECTS = srf_list.$(OBJEXT)
136 srf_list_OBJECTS = $(am_srf_list_OBJECTS)
137 srf_list_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la
138 am_trace_dump_OBJECTS = trace_dump.$(OBJEXT)
139 trace_dump_OBJECTS = $(am_trace_dump_OBJECTS)
140 trace_dump_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la
141 am_ztr_dump_OBJECTS = ztr_dump.$(OBJEXT)
142 ztr_dump_OBJECTS = $(am_ztr_dump_OBJECTS)
143 ztr_dump_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la
144 DEFAULT_INCLUDES = -I. -I$(srcdir) -I$(top_builddir)
145 depcomp = $(SHELL) $(top_srcdir)/depcomp
146 am__depfiles_maybe = depfiles
147 COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \
148 $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
149 LTCOMPILE = $(LIBTOOL) --tag=CC --mode=compile $(CC) $(DEFS) \
150 $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) \
151 $(AM_CFLAGS) $(CFLAGS)
152 CCLD = $(CC)
153 LINK = $(LIBTOOL) --tag=CC --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \
154 $(AM_LDFLAGS) $(LDFLAGS) -o $@
155 SOURCES = $(append_sff_SOURCES) $(convert_trace_SOURCES) \
156 $(extract_fastq_SOURCES) $(extract_qual_SOURCES) \
157 $(extract_seq_SOURCES) $(get_comment_SOURCES) \
158 $(hash_extract_SOURCES) $(hash_list_SOURCES) \
159 $(hash_sff_SOURCES) $(hash_tar_SOURCES) $(index_tar_SOURCES) \
160 $(makeSCF_SOURCES) $(scf_dump_SOURCES) $(scf_info_SOURCES) \
161 $(scf_update_SOURCES) $(srf2fasta_SOURCES) \
162 $(srf2fastq_SOURCES) $(srf_dump_all_SOURCES) \
163 $(srf_extract_hash_SOURCES) $(srf_extract_linear_SOURCES) \
164 $(srf_filter_SOURCES) $(srf_index_hash_SOURCES) \
165 $(srf_info_SOURCES) $(srf_list_SOURCES) $(trace_dump_SOURCES) \
166 $(ztr_dump_SOURCES)
167 DIST_SOURCES = $(append_sff_SOURCES) $(convert_trace_SOURCES) \
168 $(extract_fastq_SOURCES) $(extract_qual_SOURCES) \
169 $(extract_seq_SOURCES) $(get_comment_SOURCES) \
170 $(hash_extract_SOURCES) $(hash_list_SOURCES) \
171 $(hash_sff_SOURCES) $(hash_tar_SOURCES) $(index_tar_SOURCES) \
172 $(makeSCF_SOURCES) $(scf_dump_SOURCES) $(scf_info_SOURCES) \
173 $(scf_update_SOURCES) $(srf2fasta_SOURCES) \
174 $(srf2fastq_SOURCES) $(srf_dump_all_SOURCES) \
175 $(srf_extract_hash_SOURCES) $(srf_extract_linear_SOURCES) \
176 $(srf_filter_SOURCES) $(srf_index_hash_SOURCES) \
177 $(srf_info_SOURCES) $(srf_list_SOURCES) $(trace_dump_SOURCES) \
178 $(ztr_dump_SOURCES)
179 ETAGS = etags
180 CTAGS = ctags
181 DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
182 ACLOCAL = @ACLOCAL@
183 AMDEP_FALSE = @AMDEP_FALSE@
184 AMDEP_TRUE = @AMDEP_TRUE@
185 AMTAR = @AMTAR@
186 AR = @AR@
187 AUTOCONF = @AUTOCONF@
188 AUTOHEADER = @AUTOHEADER@
189 AUTOMAKE = @AUTOMAKE@
190 AWK = @AWK@
191 CC = @CC@
192 CCDEPMODE = @CCDEPMODE@
193 CFLAGS = @CFLAGS@
194 CPP = @CPP@
195 CPPFLAGS = @CPPFLAGS@
196 CXX = @CXX@
197 CXXCPP = @CXXCPP@
198 CXXDEPMODE = @CXXDEPMODE@
199 CXXFLAGS = @CXXFLAGS@
200 CYGPATH_W = @CYGPATH_W@
201 DEFS = @DEFS@
202 DEPDIR = @DEPDIR@
203 ECHO = @ECHO@
204 ECHO_C = @ECHO_C@
205 ECHO_N = @ECHO_N@
206 ECHO_T = @ECHO_T@
207 EGREP = @EGREP@
208 EXEEXT = @EXEEXT@
209 F77 = @F77@
210 FFLAGS = @FFLAGS@
211 GREP = @GREP@
212 HAVE_ZLIB_FALSE = @HAVE_ZLIB_FALSE@
213 HAVE_ZLIB_TRUE = @HAVE_ZLIB_TRUE@
214 INSTALL_DATA = @INSTALL_DATA@
215 INSTALL_PROGRAM = @INSTALL_PROGRAM@
216 INSTALL_SCRIPT = @INSTALL_SCRIPT@
217 INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
218 LDFLAGS = @LDFLAGS@
219 LIBCURL = @LIBCURL@
220 LIBCURL_CPPFLAGS = @LIBCURL_CPPFLAGS@
221 LIBOBJS = @LIBOBJS@
222 LIBS = @LIBS@
223 LIBTOOL = @LIBTOOL@
224 LIBZ = @LIBZ@
225 LN_S = @LN_S@
226 LTLIBOBJS = @LTLIBOBJS@
227 MAINT = @MAINT@
228 MAINTAINER_MODE_FALSE = @MAINTAINER_MODE_FALSE@
229 MAINTAINER_MODE_TRUE = @MAINTAINER_MODE_TRUE@
230 MAKEINFO = @MAKEINFO@
231 OBJEXT = @OBJEXT@
232 PACKAGE = @PACKAGE@
233 PACKAGE_BUGREPORT = @PACKAGE_BUGREPORT@
234 PACKAGE_NAME = @PACKAGE_NAME@
235 PACKAGE_STRING = @PACKAGE_STRING@
236 PACKAGE_TARNAME = @PACKAGE_TARNAME@
237 PACKAGE_VERSION = @PACKAGE_VERSION@
238 PATH_SEPARATOR = @PATH_SEPARATOR@
239 RANLIB = @RANLIB@
240 SET_MAKE = @SET_MAKE@
241 SHELL = @SHELL@
242 STRIP = @STRIP@
243 VERSION = @VERSION@
244 VERS_AGE = @VERS_AGE@
245 VERS_CURRENT = @VERS_CURRENT@
246 VERS_REVISION = @VERS_REVISION@
247 _libcurl_config = @_libcurl_config@
248 ac_ct_CC = @ac_ct_CC@
249 ac_ct_CXX = @ac_ct_CXX@
250 ac_ct_F77 = @ac_ct_F77@
251 am__fastdepCC_FALSE = @am__fastdepCC_FALSE@
252 am__fastdepCC_TRUE = @am__fastdepCC_TRUE@
253 am__fastdepCXX_FALSE = @am__fastdepCXX_FALSE@
254 am__fastdepCXX_TRUE = @am__fastdepCXX_TRUE@
255 am__include = @am__include@
256 am__leading_dot = @am__leading_dot@
257 am__quote = @am__quote@
258 am__tar = @am__tar@
259 am__untar = @am__untar@
260 bindir = @bindir@
261 build = @build@
262 build_alias = @build_alias@
263 build_cpu = @build_cpu@
264 build_os = @build_os@
265 build_vendor = @build_vendor@
266 datadir = @datadir@
267 datarootdir = @datarootdir@
268 docdir = @docdir@
269 dvidir = @dvidir@
270 exec_prefix = @exec_prefix@
271 host = @host@
272 host_alias = @host_alias@
273 host_cpu = @host_cpu@
274 host_os = @host_os@
275 host_vendor = @host_vendor@
276 htmldir = @htmldir@
277 includedir = @includedir@
278 infodir = @infodir@
279 install_sh = @install_sh@
280 libdir = @libdir@
281 libexecdir = @libexecdir@
282 localedir = @localedir@
283 localstatedir = @localstatedir@
284 mandir = @mandir@
285 mkdir_p = @mkdir_p@
286 oldincludedir = @oldincludedir@
287 pdfdir = @pdfdir@
288 prefix = @prefix@
289 program_transform_name = @program_transform_name@
290 psdir = @psdir@
291 sbindir = @sbindir@
292 sharedstatedir = @sharedstatedir@
293 sysconfdir = @sysconfdir@
294 target_alias = @target_alias@
295 convert_trace_SOURCES = convert_trace.c
296 convert_trace_LDADD = $(top_builddir)/io_lib/libstaden-read.la
297 get_comment_SOURCES = get_comment.c
298 get_comment_LDADD = $(top_builddir)/io_lib/libstaden-read.la
299 makeSCF_SOURCES = makeSCF.c
300 makeSCF_LDADD = $(top_builddir)/io_lib/libstaden-read.la
301 extract_seq_SOURCES = extract_seq.c
302 extract_seq_LDADD = $(top_builddir)/io_lib/libstaden-read.la
303 extract_qual_SOURCES = extract_qual.c
304 extract_qual_LDADD = $(top_builddir)/io_lib/libstaden-read.la
305 extract_fastq_SOURCES = extract_fastq.c
306 extract_fastq_LDADD = $(top_builddir)/io_lib/libstaden-read.la
307 index_tar_SOURCES = index_tar.c
308 scf_dump_SOURCES = scf_dump.c
309 scf_dump_LDADD = $(top_builddir)/io_lib/libstaden-read.la
310 scf_info_SOURCES = scf_info.c
311 scf_info_LDADD = $(top_builddir)/io_lib/libstaden-read.la
312 scf_update_SOURCES = scf_update.c
313 scf_update_LDADD = $(top_builddir)/io_lib/libstaden-read.la
314 hash_tar_SOURCES = hash_tar.c
315 hash_tar_LDADD = $(top_builddir)/io_lib/libstaden-read.la
316 hash_list_SOURCES = hash_list.c
317 hash_list_LDADD = $(top_builddir)/io_lib/libstaden-read.la
318 hash_sff_SOURCES = hash_sff.c
319 hash_sff_LDADD = $(top_builddir)/io_lib/libstaden-read.la
320 append_sff_SOURCES = append_sff.c
321 append_sff_LDADD = $(top_builddir)/io_lib/libstaden-read.la
322 hash_extract_SOURCES = hash_extract.c
323 hash_extract_LDADD = $(top_builddir)/io_lib/libstaden-read.la
324 trace_dump_SOURCES = trace_dump.c
325 trace_dump_LDADD = $(top_builddir)/io_lib/libstaden-read.la
326 ztr_dump_SOURCES = ztr_dump.c
327 ztr_dump_LDADD = $(top_builddir)/io_lib/libstaden-read.la
328 srf2fastq_SOURCES = srf2fastq.c
329 srf2fastq_LDADD = $(top_builddir)/io_lib/libstaden-read.la
330 srf2fasta_SOURCES = srf2fasta.c
331 srf2fasta_LDADD = $(top_builddir)/io_lib/libstaden-read.la
332 srf_dump_all_SOURCES = srf_dump_all.c
333 srf_dump_all_LDADD = $(top_builddir)/io_lib/libstaden-read.la
334 srf_extract_linear_SOURCES = srf_extract_linear.c
335 srf_extract_linear_LDADD = $(top_builddir)/io_lib/libstaden-read.la
336 srf_extract_hash_SOURCES = srf_extract_hash.c
337 srf_extract_hash_LDADD = $(top_builddir)/io_lib/libstaden-read.la
338 srf_index_hash_SOURCES = srf_index_hash.c
339 srf_index_hash_LDADD = $(top_builddir)/io_lib/libstaden-read.la
340 srf_filter_SOURCES = srf_filter.c
341 srf_filter_LDADD = $(top_builddir)/io_lib/libstaden-read.la
342 srf_info_SOURCES = srf_info.c
343 srf_info_LDADD = $(top_builddir)/io_lib/libstaden-read.la
344 srf_list_SOURCES = srf_list.c
345 srf_list_LDADD = $(top_builddir)/io_lib/libstaden-read.la
346 INCLUDES = -I${top_srcdir}
347 all: all-am
348
349 .SUFFIXES:
350 .SUFFIXES: .c .lo .o .obj
351 $(srcdir)/Makefile.in: @MAINTAINER_MODE_TRUE@ $(srcdir)/Makefile.am $(am__configure_deps)
352 @for dep in $?; do \
353 case '$(am__configure_deps)' in \
354 *$$dep*) \
355 cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh \
356 && exit 0; \
357 exit 1;; \
358 esac; \
359 done; \
360 echo ' cd $(top_srcdir) && $(AUTOMAKE) --foreign progs/Makefile'; \
361 cd $(top_srcdir) && \
362 $(AUTOMAKE) --foreign progs/Makefile
363 .PRECIOUS: Makefile
364 Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
365 @case '$?' in \
366 *config.status*) \
367 cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
368 *) \
369 echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
370 cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
371 esac;
372
373 $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
374 cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
375
376 $(top_srcdir)/configure: @MAINTAINER_MODE_TRUE@ $(am__configure_deps)
377 cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
378 $(ACLOCAL_M4): @MAINTAINER_MODE_TRUE@ $(am__aclocal_m4_deps)
379 cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
380 install-binPROGRAMS: $(bin_PROGRAMS)
381 @$(NORMAL_INSTALL)
382 test -z "$(bindir)" || $(mkdir_p) "$(DESTDIR)$(bindir)"
383 @list='$(bin_PROGRAMS)'; for p in $$list; do \
384 p1=`echo $$p|sed 's/$(EXEEXT)$$//'`; \
385 if test -f $$p \
386 || test -f $$p1 \
387 ; then \
388 f=`echo "$$p1" | sed 's,^.*/,,;$(transform);s/$$/$(EXEEXT)/'`; \
389 echo " $(INSTALL_PROGRAM_ENV) $(LIBTOOL) --mode=install $(binPROGRAMS_INSTALL) '$$p' '$(DESTDIR)$(bindir)/$$f'"; \
390 $(INSTALL_PROGRAM_ENV) $(LIBTOOL) --mode=install $(binPROGRAMS_INSTALL) "$$p" "$(DESTDIR)$(bindir)/$$f" || exit 1; \
391 else :; fi; \
392 done
393
394 uninstall-binPROGRAMS:
395 @$(NORMAL_UNINSTALL)
396 @list='$(bin_PROGRAMS)'; for p in $$list; do \
397 f=`echo "$$p" | sed 's,^.*/,,;s/$(EXEEXT)$$//;$(transform);s/$$/$(EXEEXT)/'`; \
398 echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
399 rm -f "$(DESTDIR)$(bindir)/$$f"; \
400 done
401
402 clean-binPROGRAMS:
403 @list='$(bin_PROGRAMS)'; for p in $$list; do \
404 f=`echo $$p|sed 's/$(EXEEXT)$$//'`; \
405 echo " rm -f $$p $$f"; \
406 rm -f $$p $$f ; \
407 done
408 append_sff$(EXEEXT): $(append_sff_OBJECTS) $(append_sff_DEPENDENCIES)
409 @rm -f append_sff$(EXEEXT)
410 $(LINK) $(append_sff_LDFLAGS) $(append_sff_OBJECTS) $(append_sff_LDADD) $(LIBS)
411 convert_trace$(EXEEXT): $(convert_trace_OBJECTS) $(convert_trace_DEPENDENCIES)
412 @rm -f convert_trace$(EXEEXT)
413 $(LINK) $(convert_trace_LDFLAGS) $(convert_trace_OBJECTS) $(convert_trace_LDADD) $(LIBS)
414 extract_fastq$(EXEEXT): $(extract_fastq_OBJECTS) $(extract_fastq_DEPENDENCIES)
415 @rm -f extract_fastq$(EXEEXT)
416 $(LINK) $(extract_fastq_LDFLAGS) $(extract_fastq_OBJECTS) $(extract_fastq_LDADD) $(LIBS)
417 extract_qual$(EXEEXT): $(extract_qual_OBJECTS) $(extract_qual_DEPENDENCIES)
418 @rm -f extract_qual$(EXEEXT)
419 $(LINK) $(extract_qual_LDFLAGS) $(extract_qual_OBJECTS) $(extract_qual_LDADD) $(LIBS)
420 extract_seq$(EXEEXT): $(extract_seq_OBJECTS) $(extract_seq_DEPENDENCIES)
421 @rm -f extract_seq$(EXEEXT)
422 $(LINK) $(extract_seq_LDFLAGS) $(extract_seq_OBJECTS) $(extract_seq_LDADD) $(LIBS)
423 get_comment$(EXEEXT): $(get_comment_OBJECTS) $(get_comment_DEPENDENCIES)
424 @rm -f get_comment$(EXEEXT)
425 $(LINK) $(get_comment_LDFLAGS) $(get_comment_OBJECTS) $(get_comment_LDADD) $(LIBS)
426 hash_extract$(EXEEXT): $(hash_extract_OBJECTS) $(hash_extract_DEPENDENCIES)
427 @rm -f hash_extract$(EXEEXT)
428 $(LINK) $(hash_extract_LDFLAGS) $(hash_extract_OBJECTS) $(hash_extract_LDADD) $(LIBS)
429 hash_list$(EXEEXT): $(hash_list_OBJECTS) $(hash_list_DEPENDENCIES)
430 @rm -f hash_list$(EXEEXT)
431 $(LINK) $(hash_list_LDFLAGS) $(hash_list_OBJECTS) $(hash_list_LDADD) $(LIBS)
432 hash_sff$(EXEEXT): $(hash_sff_OBJECTS) $(hash_sff_DEPENDENCIES)
433 @rm -f hash_sff$(EXEEXT)
434 $(LINK) $(hash_sff_LDFLAGS) $(hash_sff_OBJECTS) $(hash_sff_LDADD) $(LIBS)
435 hash_tar$(EXEEXT): $(hash_tar_OBJECTS) $(hash_tar_DEPENDENCIES)
436 @rm -f hash_tar$(EXEEXT)
437 $(LINK) $(hash_tar_LDFLAGS) $(hash_tar_OBJECTS) $(hash_tar_LDADD) $(LIBS)
438 index_tar$(EXEEXT): $(index_tar_OBJECTS) $(index_tar_DEPENDENCIES)
439 @rm -f index_tar$(EXEEXT)
440 $(LINK) $(index_tar_LDFLAGS) $(index_tar_OBJECTS) $(index_tar_LDADD) $(LIBS)
441 makeSCF$(EXEEXT): $(makeSCF_OBJECTS) $(makeSCF_DEPENDENCIES)
442 @rm -f makeSCF$(EXEEXT)
443 $(LINK) $(makeSCF_LDFLAGS) $(makeSCF_OBJECTS) $(makeSCF_LDADD) $(LIBS)
444 scf_dump$(EXEEXT): $(scf_dump_OBJECTS) $(scf_dump_DEPENDENCIES)
445 @rm -f scf_dump$(EXEEXT)
446 $(LINK) $(scf_dump_LDFLAGS) $(scf_dump_OBJECTS) $(scf_dump_LDADD) $(LIBS)
447 scf_info$(EXEEXT): $(scf_info_OBJECTS) $(scf_info_DEPENDENCIES)
448 @rm -f scf_info$(EXEEXT)
449 $(LINK) $(scf_info_LDFLAGS) $(scf_info_OBJECTS) $(scf_info_LDADD) $(LIBS)
450 scf_update$(EXEEXT): $(scf_update_OBJECTS) $(scf_update_DEPENDENCIES)
451 @rm -f scf_update$(EXEEXT)
452 $(LINK) $(scf_update_LDFLAGS) $(scf_update_OBJECTS) $(scf_update_LDADD) $(LIBS)
453 srf2fasta$(EXEEXT): $(srf2fasta_OBJECTS) $(srf2fasta_DEPENDENCIES)
454 @rm -f srf2fasta$(EXEEXT)
455 $(LINK) $(srf2fasta_LDFLAGS) $(srf2fasta_OBJECTS) $(srf2fasta_LDADD) $(LIBS)
456 srf2fastq$(EXEEXT): $(srf2fastq_OBJECTS) $(srf2fastq_DEPENDENCIES)
457 @rm -f srf2fastq$(EXEEXT)
458 $(LINK) $(srf2fastq_LDFLAGS) $(srf2fastq_OBJECTS) $(srf2fastq_LDADD) $(LIBS)
459 srf_dump_all$(EXEEXT): $(srf_dump_all_OBJECTS) $(srf_dump_all_DEPENDENCIES)
460 @rm -f srf_dump_all$(EXEEXT)
461 $(LINK) $(srf_dump_all_LDFLAGS) $(srf_dump_all_OBJECTS) $(srf_dump_all_LDADD) $(LIBS)
462 srf_extract_hash$(EXEEXT): $(srf_extract_hash_OBJECTS) $(srf_extract_hash_DEPENDENCIES)
463 @rm -f srf_extract_hash$(EXEEXT)
464 $(LINK) $(srf_extract_hash_LDFLAGS) $(srf_extract_hash_OBJECTS) $(srf_extract_hash_LDADD) $(LIBS)
465 srf_extract_linear$(EXEEXT): $(srf_extract_linear_OBJECTS) $(srf_extract_linear_DEPENDENCIES)
466 @rm -f srf_extract_linear$(EXEEXT)
467 $(LINK) $(srf_extract_linear_LDFLAGS) $(srf_extract_linear_OBJECTS) $(srf_extract_linear_LDADD) $(LIBS)
468 srf_filter$(EXEEXT): $(srf_filter_OBJECTS) $(srf_filter_DEPENDENCIES)
469 @rm -f srf_filter$(EXEEXT)
470 $(LINK) $(srf_filter_LDFLAGS) $(srf_filter_OBJECTS) $(srf_filter_LDADD) $(LIBS)
471 srf_index_hash$(EXEEXT): $(srf_index_hash_OBJECTS) $(srf_index_hash_DEPENDENCIES)
472 @rm -f srf_index_hash$(EXEEXT)
473 $(LINK) $(srf_index_hash_LDFLAGS) $(srf_index_hash_OBJECTS) $(srf_index_hash_LDADD) $(LIBS)
474 srf_info$(EXEEXT): $(srf_info_OBJECTS) $(srf_info_DEPENDENCIES)
475 @rm -f srf_info$(EXEEXT)
476 $(LINK) $(srf_info_LDFLAGS) $(srf_info_OBJECTS) $(srf_info_LDADD) $(LIBS)
477 srf_list$(EXEEXT): $(srf_list_OBJECTS) $(srf_list_DEPENDENCIES)
478 @rm -f srf_list$(EXEEXT)
479 $(LINK) $(srf_list_LDFLAGS) $(srf_list_OBJECTS) $(srf_list_LDADD) $(LIBS)
480 trace_dump$(EXEEXT): $(trace_dump_OBJECTS) $(trace_dump_DEPENDENCIES)
481 @rm -f trace_dump$(EXEEXT)
482 $(LINK) $(trace_dump_LDFLAGS) $(trace_dump_OBJECTS) $(trace_dump_LDADD) $(LIBS)
483 ztr_dump$(EXEEXT): $(ztr_dump_OBJECTS) $(ztr_dump_DEPENDENCIES)
484 @rm -f ztr_dump$(EXEEXT)
485 $(LINK) $(ztr_dump_LDFLAGS) $(ztr_dump_OBJECTS) $(ztr_dump_LDADD) $(LIBS)
486
487 mostlyclean-compile:
488 -rm -f *.$(OBJEXT)
489
490 distclean-compile:
491 -rm -f *.tab.c
492
493 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/append_sff.Po@am__quote@
494 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/convert_trace.Po@am__quote@
495 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/extract_fastq.Po@am__quote@
496 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/extract_qual.Po@am__quote@
497 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/extract_seq.Po@am__quote@
498 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/get_comment.Po@am__quote@
499 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/hash_extract.Po@am__quote@
500 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/hash_list.Po@am__quote@
501 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/hash_sff.Po@am__quote@
502 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/hash_tar.Po@am__quote@
503 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/index_tar.Po@am__quote@
504 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/makeSCF.Po@am__quote@
505 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/scf_dump.Po@am__quote@
506 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/scf_info.Po@am__quote@
507 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/scf_update.Po@am__quote@
508 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/srf2fasta.Po@am__quote@
509 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/srf2fastq.Po@am__quote@
510 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/srf_dump_all.Po@am__quote@
511 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/srf_extract_hash.Po@am__quote@
512 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/srf_extract_linear.Po@am__quote@
513 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/srf_filter.Po@am__quote@
514 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/srf_index_hash.Po@am__quote@
515 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/srf_info.Po@am__quote@
516 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/srf_list.Po@am__quote@
517 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/trace_dump.Po@am__quote@
518 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/ztr_dump.Po@am__quote@
519
520 .c.o:
521 @am__fastdepCC_TRUE@ if $(COMPILE) -MT $@ -MD -MP -MF "$(DEPDIR)/$*.Tpo" -c -o $@ $<; \
522 @am__fastdepCC_TRUE@ then mv -f "$(DEPDIR)/$*.Tpo" "$(DEPDIR)/$*.Po"; else rm -f "$(DEPDIR)/$*.Tpo"; exit 1; fi
523 @AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
524 @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
525 @am__fastdepCC_FALSE@ $(COMPILE) -c $<
526
527 .c.obj:
528 @am__fastdepCC_TRUE@ if $(COMPILE) -MT $@ -MD -MP -MF "$(DEPDIR)/$*.Tpo" -c -o $@ `$(CYGPATH_W) '$<'`; \
529 @am__fastdepCC_TRUE@ then mv -f "$(DEPDIR)/$*.Tpo" "$(DEPDIR)/$*.Po"; else rm -f "$(DEPDIR)/$*.Tpo"; exit 1; fi
530 @AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
531 @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
532 @am__fastdepCC_FALSE@ $(COMPILE) -c `$(CYGPATH_W) '$<'`
533
534 .c.lo:
535 @am__fastdepCC_TRUE@ if $(LTCOMPILE) -MT $@ -MD -MP -MF "$(DEPDIR)/$*.Tpo" -c -o $@ $<; \
536 @am__fastdepCC_TRUE@ then mv -f "$(DEPDIR)/$*.Tpo" "$(DEPDIR)/$*.Plo"; else rm -f "$(DEPDIR)/$*.Tpo"; exit 1; fi
537 @AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@
538 @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
539 @am__fastdepCC_FALSE@ $(LTCOMPILE) -c -o $@ $<
540
541 mostlyclean-libtool:
542 -rm -f *.lo
543
544 clean-libtool:
545 -rm -rf .libs _libs
546
547 distclean-libtool:
548 -rm -f libtool
549 uninstall-info-am:
550
551 ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES)
552 list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
553 unique=`for i in $$list; do \
554 if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
555 done | \
556 $(AWK) ' { files[$$0] = 1; } \
557 END { for (i in files) print i; }'`; \
558 mkid -fID $$unique
559 tags: TAGS
560
561 TAGS: $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \
562 $(TAGS_FILES) $(LISP)
563 tags=; \
564 here=`pwd`; \
565 list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
566 unique=`for i in $$list; do \
567 if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
568 done | \
569 $(AWK) ' { files[$$0] = 1; } \
570 END { for (i in files) print i; }'`; \
571 if test -z "$(ETAGS_ARGS)$$tags$$unique"; then :; else \
572 test -n "$$unique" || unique=$$empty_fix; \
573 $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
574 $$tags $$unique; \
575 fi
576 ctags: CTAGS
577 CTAGS: $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \
578 $(TAGS_FILES) $(LISP)
579 tags=; \
580 here=`pwd`; \
581 list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
582 unique=`for i in $$list; do \
583 if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
584 done | \
585 $(AWK) ' { files[$$0] = 1; } \
586 END { for (i in files) print i; }'`; \
587 test -z "$(CTAGS_ARGS)$$tags$$unique" \
588 || $(CTAGS) $(CTAGSFLAGS) $(AM_CTAGSFLAGS) $(CTAGS_ARGS) \
589 $$tags $$unique
590
591 GTAGS:
592 here=`$(am__cd) $(top_builddir) && pwd` \
593 && cd $(top_srcdir) \
594 && gtags -i $(GTAGS_ARGS) $$here
595
596 distclean-tags:
597 -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
598
599 distdir: $(DISTFILES)
600 @srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`; \
601 topsrcdirstrip=`echo "$(top_srcdir)" | sed 's|.|.|g'`; \
602 list='$(DISTFILES)'; for file in $$list; do \
603 case $$file in \
604 $(srcdir)/*) file=`echo "$$file" | sed "s|^$$srcdirstrip/||"`;; \
605 $(top_srcdir)/*) file=`echo "$$file" | sed "s|^$$topsrcdirstrip/|$(top_builddir)/|"`;; \
606 esac; \
607 if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
608 dir=`echo "$$file" | sed -e 's,/[^/]*$$,,'`; \
609 if test "$$dir" != "$$file" && test "$$dir" != "."; then \
610 dir="/$$dir"; \
611 $(mkdir_p) "$(distdir)$$dir"; \
612 else \
613 dir=''; \
614 fi; \
615 if test -d $$d/$$file; then \
616 if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
617 cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
618 fi; \
619 cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
620 else \
621 test -f $(distdir)/$$file \
622 || cp -p $$d/$$file $(distdir)/$$file \
623 || exit 1; \
624 fi; \
625 done
626 check-am: all-am
627 check: check-am
628 all-am: Makefile $(PROGRAMS)
629 installdirs:
630 for dir in "$(DESTDIR)$(bindir)"; do \
631 test -z "$$dir" || $(mkdir_p) "$$dir"; \
632 done
633 install: install-am
634 install-exec: install-exec-am
635 install-data: install-data-am
636 uninstall: uninstall-am
637
638 install-am: all-am
639 @$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
640
641 installcheck: installcheck-am
642 install-strip:
643 $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
644 install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
645 `test -z '$(STRIP)' || \
646 echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
647 mostlyclean-generic:
648
649 clean-generic:
650
651 distclean-generic:
652 -test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
653
654 maintainer-clean-generic:
655 @echo "This command is intended for maintainers to use"
656 @echo "it deletes files that may require special tools to rebuild."
657 clean: clean-am
658
659 clean-am: clean-binPROGRAMS clean-generic clean-libtool mostlyclean-am
660
661 distclean: distclean-am
662 -rm -rf ./$(DEPDIR)
663 -rm -f Makefile
664 distclean-am: clean-am distclean-compile distclean-generic \
665 distclean-libtool distclean-tags
666
667 dvi: dvi-am
668
669 dvi-am:
670
671 html: html-am
672
673 info: info-am
674
675 info-am:
676
677 install-data-am:
678
679 install-exec-am: install-binPROGRAMS
680
681 install-info: install-info-am
682
683 install-man:
684
685 installcheck-am:
686
687 maintainer-clean: maintainer-clean-am
688 -rm -rf ./$(DEPDIR)
689 -rm -f Makefile
690 maintainer-clean-am: distclean-am maintainer-clean-generic
691
692 mostlyclean: mostlyclean-am
693
694 mostlyclean-am: mostlyclean-compile mostlyclean-generic \
695 mostlyclean-libtool
696
697 pdf: pdf-am
698
699 pdf-am:
700
701 ps: ps-am
702
703 ps-am:
704
705 uninstall-am: uninstall-binPROGRAMS uninstall-info-am
706
707 .PHONY: CTAGS GTAGS all all-am check check-am clean clean-binPROGRAMS \
708 clean-generic clean-libtool ctags distclean distclean-compile \
709 distclean-generic distclean-libtool distclean-tags distdir dvi \
710 dvi-am html html-am info info-am install install-am \
711 install-binPROGRAMS install-data install-data-am install-exec \
712 install-exec-am install-info install-info-am install-man \
713 install-strip installcheck installcheck-am installdirs \
714 maintainer-clean maintainer-clean-generic mostlyclean \
715 mostlyclean-compile mostlyclean-generic mostlyclean-libtool \
716 pdf pdf-am ps ps-am tags uninstall uninstall-am \
717 uninstall-binPROGRAMS uninstall-info-am
718
719 # Tell versions [3.59,3.63) of GNU make to not export all variables.
720 # Otherwise a system limit (for SysV at least) may be exceeded.
721 .NOEXPORT: