diff srf2fastq/io_lib-1.12.2/progs/Makefile.in @ 0:d901c9f41a6a default tip

Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
author dawe
date Tue, 07 Jun 2011 17:48:05 -0400
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/srf2fastq/io_lib-1.12.2/progs/Makefile.in	Tue Jun 07 17:48:05 2011 -0400
@@ -0,0 +1,721 @@
+# Makefile.in generated by automake 1.9.6 from Makefile.am.
+# @configure_input@
+
+# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
+# 2003, 2004, 2005  Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+@SET_MAKE@
+
+srcdir = @srcdir@
+top_srcdir = @top_srcdir@
+VPATH = @srcdir@
+pkgdatadir = $(datadir)/@PACKAGE@
+pkglibdir = $(libdir)/@PACKAGE@
+pkgincludedir = $(includedir)/@PACKAGE@
+top_builddir = ..
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+INSTALL = @INSTALL@
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = $(program_transform_name)
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+build_triplet = @build@
+host_triplet = @host@
+bin_PROGRAMS = convert_trace$(EXEEXT) makeSCF$(EXEEXT) \
+	extract_seq$(EXEEXT) extract_qual$(EXEEXT) \
+	extract_fastq$(EXEEXT) index_tar$(EXEEXT) scf_dump$(EXEEXT) \
+	scf_info$(EXEEXT) scf_update$(EXEEXT) get_comment$(EXEEXT) \
+	hash_tar$(EXEEXT) hash_extract$(EXEEXT) hash_list$(EXEEXT) \
+	trace_dump$(EXEEXT) hash_sff$(EXEEXT) append_sff$(EXEEXT) \
+	ztr_dump$(EXEEXT) srf_dump_all$(EXEEXT) \
+	srf_index_hash$(EXEEXT) srf_extract_linear$(EXEEXT) \
+	srf_extract_hash$(EXEEXT) srf2fastq$(EXEEXT) \
+	srf2fasta$(EXEEXT) srf_filter$(EXEEXT) srf_info$(EXEEXT) \
+	srf_list$(EXEEXT)
+subdir = progs
+DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
+am__aclocal_m4_deps = $(top_srcdir)/acinclude.m4 \
+	$(top_srcdir)/configure.in
+am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
+	$(ACLOCAL_M4)
+mkinstalldirs = $(install_sh) -d
+CONFIG_HEADER = $(top_builddir)/io_lib_config.h
+CONFIG_CLEAN_FILES =
+am__installdirs = "$(DESTDIR)$(bindir)"
+binPROGRAMS_INSTALL = $(INSTALL_PROGRAM)
+PROGRAMS = $(bin_PROGRAMS)
+am_append_sff_OBJECTS = append_sff.$(OBJEXT)
+append_sff_OBJECTS = $(am_append_sff_OBJECTS)
+append_sff_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la
+am_convert_trace_OBJECTS = convert_trace.$(OBJEXT)
+convert_trace_OBJECTS = $(am_convert_trace_OBJECTS)
+convert_trace_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la
+am_extract_fastq_OBJECTS = extract_fastq.$(OBJEXT)
+extract_fastq_OBJECTS = $(am_extract_fastq_OBJECTS)
+extract_fastq_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la
+am_extract_qual_OBJECTS = extract_qual.$(OBJEXT)
+extract_qual_OBJECTS = $(am_extract_qual_OBJECTS)
+extract_qual_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la
+am_extract_seq_OBJECTS = extract_seq.$(OBJEXT)
+extract_seq_OBJECTS = $(am_extract_seq_OBJECTS)
+extract_seq_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la
+am_get_comment_OBJECTS = get_comment.$(OBJEXT)
+get_comment_OBJECTS = $(am_get_comment_OBJECTS)
+get_comment_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la
+am_hash_extract_OBJECTS = hash_extract.$(OBJEXT)
+hash_extract_OBJECTS = $(am_hash_extract_OBJECTS)
+hash_extract_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la
+am_hash_list_OBJECTS = hash_list.$(OBJEXT)
+hash_list_OBJECTS = $(am_hash_list_OBJECTS)
+hash_list_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la
+am_hash_sff_OBJECTS = hash_sff.$(OBJEXT)
+hash_sff_OBJECTS = $(am_hash_sff_OBJECTS)
+hash_sff_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la
+am_hash_tar_OBJECTS = hash_tar.$(OBJEXT)
+hash_tar_OBJECTS = $(am_hash_tar_OBJECTS)
+hash_tar_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la
+am_index_tar_OBJECTS = index_tar.$(OBJEXT)
+index_tar_OBJECTS = $(am_index_tar_OBJECTS)
+index_tar_LDADD = $(LDADD)
+am_makeSCF_OBJECTS = makeSCF.$(OBJEXT)
+makeSCF_OBJECTS = $(am_makeSCF_OBJECTS)
+makeSCF_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la
+am_scf_dump_OBJECTS = scf_dump.$(OBJEXT)
+scf_dump_OBJECTS = $(am_scf_dump_OBJECTS)
+scf_dump_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la
+am_scf_info_OBJECTS = scf_info.$(OBJEXT)
+scf_info_OBJECTS = $(am_scf_info_OBJECTS)
+scf_info_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la
+am_scf_update_OBJECTS = scf_update.$(OBJEXT)
+scf_update_OBJECTS = $(am_scf_update_OBJECTS)
+scf_update_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la
+am_srf2fasta_OBJECTS = srf2fasta.$(OBJEXT)
+srf2fasta_OBJECTS = $(am_srf2fasta_OBJECTS)
+srf2fasta_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la
+am_srf2fastq_OBJECTS = srf2fastq.$(OBJEXT)
+srf2fastq_OBJECTS = $(am_srf2fastq_OBJECTS)
+srf2fastq_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la
+am_srf_dump_all_OBJECTS = srf_dump_all.$(OBJEXT)
+srf_dump_all_OBJECTS = $(am_srf_dump_all_OBJECTS)
+srf_dump_all_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la
+am_srf_extract_hash_OBJECTS = srf_extract_hash.$(OBJEXT)
+srf_extract_hash_OBJECTS = $(am_srf_extract_hash_OBJECTS)
+srf_extract_hash_DEPENDENCIES =  \
+	$(top_builddir)/io_lib/libstaden-read.la
+am_srf_extract_linear_OBJECTS = srf_extract_linear.$(OBJEXT)
+srf_extract_linear_OBJECTS = $(am_srf_extract_linear_OBJECTS)
+srf_extract_linear_DEPENDENCIES =  \
+	$(top_builddir)/io_lib/libstaden-read.la
+am_srf_filter_OBJECTS = srf_filter.$(OBJEXT)
+srf_filter_OBJECTS = $(am_srf_filter_OBJECTS)
+srf_filter_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la
+am_srf_index_hash_OBJECTS = srf_index_hash.$(OBJEXT)
+srf_index_hash_OBJECTS = $(am_srf_index_hash_OBJECTS)
+srf_index_hash_DEPENDENCIES =  \
+	$(top_builddir)/io_lib/libstaden-read.la
+am_srf_info_OBJECTS = srf_info.$(OBJEXT)
+srf_info_OBJECTS = $(am_srf_info_OBJECTS)
+srf_info_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la
+am_srf_list_OBJECTS = srf_list.$(OBJEXT)
+srf_list_OBJECTS = $(am_srf_list_OBJECTS)
+srf_list_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la
+am_trace_dump_OBJECTS = trace_dump.$(OBJEXT)
+trace_dump_OBJECTS = $(am_trace_dump_OBJECTS)
+trace_dump_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la
+am_ztr_dump_OBJECTS = ztr_dump.$(OBJEXT)
+ztr_dump_OBJECTS = $(am_ztr_dump_OBJECTS)
+ztr_dump_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la
+DEFAULT_INCLUDES = -I. -I$(srcdir) -I$(top_builddir)
+depcomp = $(SHELL) $(top_srcdir)/depcomp
+am__depfiles_maybe = depfiles
+COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \
+	$(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
+LTCOMPILE = $(LIBTOOL) --tag=CC --mode=compile $(CC) $(DEFS) \
+	$(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) \
+	$(AM_CFLAGS) $(CFLAGS)
+CCLD = $(CC)
+LINK = $(LIBTOOL) --tag=CC --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \
+	$(AM_LDFLAGS) $(LDFLAGS) -o $@
+SOURCES = $(append_sff_SOURCES) $(convert_trace_SOURCES) \
+	$(extract_fastq_SOURCES) $(extract_qual_SOURCES) \
+	$(extract_seq_SOURCES) $(get_comment_SOURCES) \
+	$(hash_extract_SOURCES) $(hash_list_SOURCES) \
+	$(hash_sff_SOURCES) $(hash_tar_SOURCES) $(index_tar_SOURCES) \
+	$(makeSCF_SOURCES) $(scf_dump_SOURCES) $(scf_info_SOURCES) \
+	$(scf_update_SOURCES) $(srf2fasta_SOURCES) \
+	$(srf2fastq_SOURCES) $(srf_dump_all_SOURCES) \
+	$(srf_extract_hash_SOURCES) $(srf_extract_linear_SOURCES) \
+	$(srf_filter_SOURCES) $(srf_index_hash_SOURCES) \
+	$(srf_info_SOURCES) $(srf_list_SOURCES) $(trace_dump_SOURCES) \
+	$(ztr_dump_SOURCES)
+DIST_SOURCES = $(append_sff_SOURCES) $(convert_trace_SOURCES) \
+	$(extract_fastq_SOURCES) $(extract_qual_SOURCES) \
+	$(extract_seq_SOURCES) $(get_comment_SOURCES) \
+	$(hash_extract_SOURCES) $(hash_list_SOURCES) \
+	$(hash_sff_SOURCES) $(hash_tar_SOURCES) $(index_tar_SOURCES) \
+	$(makeSCF_SOURCES) $(scf_dump_SOURCES) $(scf_info_SOURCES) \
+	$(scf_update_SOURCES) $(srf2fasta_SOURCES) \
+	$(srf2fastq_SOURCES) $(srf_dump_all_SOURCES) \
+	$(srf_extract_hash_SOURCES) $(srf_extract_linear_SOURCES) \
+	$(srf_filter_SOURCES) $(srf_index_hash_SOURCES) \
+	$(srf_info_SOURCES) $(srf_list_SOURCES) $(trace_dump_SOURCES) \
+	$(ztr_dump_SOURCES)
+ETAGS = etags
+CTAGS = ctags
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+ACLOCAL = @ACLOCAL@
+AMDEP_FALSE = @AMDEP_FALSE@
+AMDEP_TRUE = @AMDEP_TRUE@
+AMTAR = @AMTAR@
+AR = @AR@
+AUTOCONF = @AUTOCONF@
+AUTOHEADER = @AUTOHEADER@
+AUTOMAKE = @AUTOMAKE@
+AWK = @AWK@
+CC = @CC@
+CCDEPMODE = @CCDEPMODE@
+CFLAGS = @CFLAGS@
+CPP = @CPP@
+CPPFLAGS = @CPPFLAGS@
+CXX = @CXX@
+CXXCPP = @CXXCPP@
+CXXDEPMODE = @CXXDEPMODE@
+CXXFLAGS = @CXXFLAGS@
+CYGPATH_W = @CYGPATH_W@
+DEFS = @DEFS@
+DEPDIR = @DEPDIR@
+ECHO = @ECHO@
+ECHO_C = @ECHO_C@
+ECHO_N = @ECHO_N@
+ECHO_T = @ECHO_T@
+EGREP = @EGREP@
+EXEEXT = @EXEEXT@
+F77 = @F77@
+FFLAGS = @FFLAGS@
+GREP = @GREP@
+HAVE_ZLIB_FALSE = @HAVE_ZLIB_FALSE@
+HAVE_ZLIB_TRUE = @HAVE_ZLIB_TRUE@
+INSTALL_DATA = @INSTALL_DATA@
+INSTALL_PROGRAM = @INSTALL_PROGRAM@
+INSTALL_SCRIPT = @INSTALL_SCRIPT@
+INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
+LDFLAGS = @LDFLAGS@
+LIBCURL = @LIBCURL@
+LIBCURL_CPPFLAGS = @LIBCURL_CPPFLAGS@
+LIBOBJS = @LIBOBJS@
+LIBS = @LIBS@
+LIBTOOL = @LIBTOOL@
+LIBZ = @LIBZ@
+LN_S = @LN_S@
+LTLIBOBJS = @LTLIBOBJS@
+MAINT = @MAINT@
+MAINTAINER_MODE_FALSE = @MAINTAINER_MODE_FALSE@
+MAINTAINER_MODE_TRUE = @MAINTAINER_MODE_TRUE@
+MAKEINFO = @MAKEINFO@
+OBJEXT = @OBJEXT@
+PACKAGE = @PACKAGE@
+PACKAGE_BUGREPORT = @PACKAGE_BUGREPORT@
+PACKAGE_NAME = @PACKAGE_NAME@
+PACKAGE_STRING = @PACKAGE_STRING@
+PACKAGE_TARNAME = @PACKAGE_TARNAME@
+PACKAGE_VERSION = @PACKAGE_VERSION@
+PATH_SEPARATOR = @PATH_SEPARATOR@
+RANLIB = @RANLIB@
+SET_MAKE = @SET_MAKE@
+SHELL = @SHELL@
+STRIP = @STRIP@
+VERSION = @VERSION@
+VERS_AGE = @VERS_AGE@
+VERS_CURRENT = @VERS_CURRENT@
+VERS_REVISION = @VERS_REVISION@
+_libcurl_config = @_libcurl_config@
+ac_ct_CC = @ac_ct_CC@
+ac_ct_CXX = @ac_ct_CXX@
+ac_ct_F77 = @ac_ct_F77@
+am__fastdepCC_FALSE = @am__fastdepCC_FALSE@
+am__fastdepCC_TRUE = @am__fastdepCC_TRUE@
+am__fastdepCXX_FALSE = @am__fastdepCXX_FALSE@
+am__fastdepCXX_TRUE = @am__fastdepCXX_TRUE@
+am__include = @am__include@
+am__leading_dot = @am__leading_dot@
+am__quote = @am__quote@
+am__tar = @am__tar@
+am__untar = @am__untar@
+bindir = @bindir@
+build = @build@
+build_alias = @build_alias@
+build_cpu = @build_cpu@
+build_os = @build_os@
+build_vendor = @build_vendor@
+datadir = @datadir@
+datarootdir = @datarootdir@
+docdir = @docdir@
+dvidir = @dvidir@
+exec_prefix = @exec_prefix@
+host = @host@
+host_alias = @host_alias@
+host_cpu = @host_cpu@
+host_os = @host_os@
+host_vendor = @host_vendor@
+htmldir = @htmldir@
+includedir = @includedir@
+infodir = @infodir@
+install_sh = @install_sh@
+libdir = @libdir@
+libexecdir = @libexecdir@
+localedir = @localedir@
+localstatedir = @localstatedir@
+mandir = @mandir@
+mkdir_p = @mkdir_p@
+oldincludedir = @oldincludedir@
+pdfdir = @pdfdir@
+prefix = @prefix@
+program_transform_name = @program_transform_name@
+psdir = @psdir@
+sbindir = @sbindir@
+sharedstatedir = @sharedstatedir@
+sysconfdir = @sysconfdir@
+target_alias = @target_alias@
+convert_trace_SOURCES = convert_trace.c
+convert_trace_LDADD = $(top_builddir)/io_lib/libstaden-read.la
+get_comment_SOURCES = get_comment.c
+get_comment_LDADD = $(top_builddir)/io_lib/libstaden-read.la
+makeSCF_SOURCES = makeSCF.c
+makeSCF_LDADD = $(top_builddir)/io_lib/libstaden-read.la
+extract_seq_SOURCES = extract_seq.c
+extract_seq_LDADD = $(top_builddir)/io_lib/libstaden-read.la
+extract_qual_SOURCES = extract_qual.c
+extract_qual_LDADD = $(top_builddir)/io_lib/libstaden-read.la
+extract_fastq_SOURCES = extract_fastq.c
+extract_fastq_LDADD = $(top_builddir)/io_lib/libstaden-read.la
+index_tar_SOURCES = index_tar.c
+scf_dump_SOURCES = scf_dump.c
+scf_dump_LDADD = $(top_builddir)/io_lib/libstaden-read.la
+scf_info_SOURCES = scf_info.c
+scf_info_LDADD = $(top_builddir)/io_lib/libstaden-read.la
+scf_update_SOURCES = scf_update.c
+scf_update_LDADD = $(top_builddir)/io_lib/libstaden-read.la
+hash_tar_SOURCES = hash_tar.c
+hash_tar_LDADD = $(top_builddir)/io_lib/libstaden-read.la
+hash_list_SOURCES = hash_list.c
+hash_list_LDADD = $(top_builddir)/io_lib/libstaden-read.la
+hash_sff_SOURCES = hash_sff.c
+hash_sff_LDADD = $(top_builddir)/io_lib/libstaden-read.la
+append_sff_SOURCES = append_sff.c
+append_sff_LDADD = $(top_builddir)/io_lib/libstaden-read.la
+hash_extract_SOURCES = hash_extract.c
+hash_extract_LDADD = $(top_builddir)/io_lib/libstaden-read.la
+trace_dump_SOURCES = trace_dump.c
+trace_dump_LDADD = $(top_builddir)/io_lib/libstaden-read.la
+ztr_dump_SOURCES = ztr_dump.c
+ztr_dump_LDADD = $(top_builddir)/io_lib/libstaden-read.la
+srf2fastq_SOURCES = srf2fastq.c
+srf2fastq_LDADD = $(top_builddir)/io_lib/libstaden-read.la
+srf2fasta_SOURCES = srf2fasta.c
+srf2fasta_LDADD = $(top_builddir)/io_lib/libstaden-read.la
+srf_dump_all_SOURCES = srf_dump_all.c
+srf_dump_all_LDADD = $(top_builddir)/io_lib/libstaden-read.la
+srf_extract_linear_SOURCES = srf_extract_linear.c
+srf_extract_linear_LDADD = $(top_builddir)/io_lib/libstaden-read.la
+srf_extract_hash_SOURCES = srf_extract_hash.c
+srf_extract_hash_LDADD = $(top_builddir)/io_lib/libstaden-read.la
+srf_index_hash_SOURCES = srf_index_hash.c
+srf_index_hash_LDADD = $(top_builddir)/io_lib/libstaden-read.la
+srf_filter_SOURCES = srf_filter.c
+srf_filter_LDADD = $(top_builddir)/io_lib/libstaden-read.la
+srf_info_SOURCES = srf_info.c
+srf_info_LDADD = $(top_builddir)/io_lib/libstaden-read.la
+srf_list_SOURCES = srf_list.c
+srf_list_LDADD = $(top_builddir)/io_lib/libstaden-read.la
+INCLUDES = -I${top_srcdir}
+all: all-am
+
+.SUFFIXES:
+.SUFFIXES: .c .lo .o .obj
+$(srcdir)/Makefile.in: @MAINTAINER_MODE_TRUE@ $(srcdir)/Makefile.am  $(am__configure_deps)
+	@for dep in $?; do \
+	  case '$(am__configure_deps)' in \
+	    *$$dep*) \
+	      cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh \
+		&& exit 0; \
+	      exit 1;; \
+	  esac; \
+	done; \
+	echo ' cd $(top_srcdir) && $(AUTOMAKE) --foreign  progs/Makefile'; \
+	cd $(top_srcdir) && \
+	  $(AUTOMAKE) --foreign  progs/Makefile
+.PRECIOUS: Makefile
+Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
+	@case '$?' in \
+	  *config.status*) \
+	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
+	  *) \
+	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
+	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
+	esac;
+
+$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+
+$(top_srcdir)/configure: @MAINTAINER_MODE_TRUE@ $(am__configure_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+$(ACLOCAL_M4): @MAINTAINER_MODE_TRUE@ $(am__aclocal_m4_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+install-binPROGRAMS: $(bin_PROGRAMS)
+	@$(NORMAL_INSTALL)
+	test -z "$(bindir)" || $(mkdir_p) "$(DESTDIR)$(bindir)"
+	@list='$(bin_PROGRAMS)'; for p in $$list; do \
+	  p1=`echo $$p|sed 's/$(EXEEXT)$$//'`; \
+	  if test -f $$p \
+	     || test -f $$p1 \
+	  ; then \
+	    f=`echo "$$p1" | sed 's,^.*/,,;$(transform);s/$$/$(EXEEXT)/'`; \
+	   echo " $(INSTALL_PROGRAM_ENV) $(LIBTOOL) --mode=install $(binPROGRAMS_INSTALL) '$$p' '$(DESTDIR)$(bindir)/$$f'"; \
+	   $(INSTALL_PROGRAM_ENV) $(LIBTOOL) --mode=install $(binPROGRAMS_INSTALL) "$$p" "$(DESTDIR)$(bindir)/$$f" || exit 1; \
+	  else :; fi; \
+	done
+
+uninstall-binPROGRAMS:
+	@$(NORMAL_UNINSTALL)
+	@list='$(bin_PROGRAMS)'; for p in $$list; do \
+	  f=`echo "$$p" | sed 's,^.*/,,;s/$(EXEEXT)$$//;$(transform);s/$$/$(EXEEXT)/'`; \
+	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
+	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
+	done
+
+clean-binPROGRAMS:
+	@list='$(bin_PROGRAMS)'; for p in $$list; do \
+	  f=`echo $$p|sed 's/$(EXEEXT)$$//'`; \
+	  echo " rm -f $$p $$f"; \
+	  rm -f $$p $$f ; \
+	done
+append_sff$(EXEEXT): $(append_sff_OBJECTS) $(append_sff_DEPENDENCIES) 
+	@rm -f append_sff$(EXEEXT)
+	$(LINK) $(append_sff_LDFLAGS) $(append_sff_OBJECTS) $(append_sff_LDADD) $(LIBS)
+convert_trace$(EXEEXT): $(convert_trace_OBJECTS) $(convert_trace_DEPENDENCIES) 
+	@rm -f convert_trace$(EXEEXT)
+	$(LINK) $(convert_trace_LDFLAGS) $(convert_trace_OBJECTS) $(convert_trace_LDADD) $(LIBS)
+extract_fastq$(EXEEXT): $(extract_fastq_OBJECTS) $(extract_fastq_DEPENDENCIES) 
+	@rm -f extract_fastq$(EXEEXT)
+	$(LINK) $(extract_fastq_LDFLAGS) $(extract_fastq_OBJECTS) $(extract_fastq_LDADD) $(LIBS)
+extract_qual$(EXEEXT): $(extract_qual_OBJECTS) $(extract_qual_DEPENDENCIES) 
+	@rm -f extract_qual$(EXEEXT)
+	$(LINK) $(extract_qual_LDFLAGS) $(extract_qual_OBJECTS) $(extract_qual_LDADD) $(LIBS)
+extract_seq$(EXEEXT): $(extract_seq_OBJECTS) $(extract_seq_DEPENDENCIES) 
+	@rm -f extract_seq$(EXEEXT)
+	$(LINK) $(extract_seq_LDFLAGS) $(extract_seq_OBJECTS) $(extract_seq_LDADD) $(LIBS)
+get_comment$(EXEEXT): $(get_comment_OBJECTS) $(get_comment_DEPENDENCIES) 
+	@rm -f get_comment$(EXEEXT)
+	$(LINK) $(get_comment_LDFLAGS) $(get_comment_OBJECTS) $(get_comment_LDADD) $(LIBS)
+hash_extract$(EXEEXT): $(hash_extract_OBJECTS) $(hash_extract_DEPENDENCIES) 
+	@rm -f hash_extract$(EXEEXT)
+	$(LINK) $(hash_extract_LDFLAGS) $(hash_extract_OBJECTS) $(hash_extract_LDADD) $(LIBS)
+hash_list$(EXEEXT): $(hash_list_OBJECTS) $(hash_list_DEPENDENCIES) 
+	@rm -f hash_list$(EXEEXT)
+	$(LINK) $(hash_list_LDFLAGS) $(hash_list_OBJECTS) $(hash_list_LDADD) $(LIBS)
+hash_sff$(EXEEXT): $(hash_sff_OBJECTS) $(hash_sff_DEPENDENCIES) 
+	@rm -f hash_sff$(EXEEXT)
+	$(LINK) $(hash_sff_LDFLAGS) $(hash_sff_OBJECTS) $(hash_sff_LDADD) $(LIBS)
+hash_tar$(EXEEXT): $(hash_tar_OBJECTS) $(hash_tar_DEPENDENCIES) 
+	@rm -f hash_tar$(EXEEXT)
+	$(LINK) $(hash_tar_LDFLAGS) $(hash_tar_OBJECTS) $(hash_tar_LDADD) $(LIBS)
+index_tar$(EXEEXT): $(index_tar_OBJECTS) $(index_tar_DEPENDENCIES) 
+	@rm -f index_tar$(EXEEXT)
+	$(LINK) $(index_tar_LDFLAGS) $(index_tar_OBJECTS) $(index_tar_LDADD) $(LIBS)
+makeSCF$(EXEEXT): $(makeSCF_OBJECTS) $(makeSCF_DEPENDENCIES) 
+	@rm -f makeSCF$(EXEEXT)
+	$(LINK) $(makeSCF_LDFLAGS) $(makeSCF_OBJECTS) $(makeSCF_LDADD) $(LIBS)
+scf_dump$(EXEEXT): $(scf_dump_OBJECTS) $(scf_dump_DEPENDENCIES) 
+	@rm -f scf_dump$(EXEEXT)
+	$(LINK) $(scf_dump_LDFLAGS) $(scf_dump_OBJECTS) $(scf_dump_LDADD) $(LIBS)
+scf_info$(EXEEXT): $(scf_info_OBJECTS) $(scf_info_DEPENDENCIES) 
+	@rm -f scf_info$(EXEEXT)
+	$(LINK) $(scf_info_LDFLAGS) $(scf_info_OBJECTS) $(scf_info_LDADD) $(LIBS)
+scf_update$(EXEEXT): $(scf_update_OBJECTS) $(scf_update_DEPENDENCIES) 
+	@rm -f scf_update$(EXEEXT)
+	$(LINK) $(scf_update_LDFLAGS) $(scf_update_OBJECTS) $(scf_update_LDADD) $(LIBS)
+srf2fasta$(EXEEXT): $(srf2fasta_OBJECTS) $(srf2fasta_DEPENDENCIES) 
+	@rm -f srf2fasta$(EXEEXT)
+	$(LINK) $(srf2fasta_LDFLAGS) $(srf2fasta_OBJECTS) $(srf2fasta_LDADD) $(LIBS)
+srf2fastq$(EXEEXT): $(srf2fastq_OBJECTS) $(srf2fastq_DEPENDENCIES) 
+	@rm -f srf2fastq$(EXEEXT)
+	$(LINK) $(srf2fastq_LDFLAGS) $(srf2fastq_OBJECTS) $(srf2fastq_LDADD) $(LIBS)
+srf_dump_all$(EXEEXT): $(srf_dump_all_OBJECTS) $(srf_dump_all_DEPENDENCIES) 
+	@rm -f srf_dump_all$(EXEEXT)
+	$(LINK) $(srf_dump_all_LDFLAGS) $(srf_dump_all_OBJECTS) $(srf_dump_all_LDADD) $(LIBS)
+srf_extract_hash$(EXEEXT): $(srf_extract_hash_OBJECTS) $(srf_extract_hash_DEPENDENCIES) 
+	@rm -f srf_extract_hash$(EXEEXT)
+	$(LINK) $(srf_extract_hash_LDFLAGS) $(srf_extract_hash_OBJECTS) $(srf_extract_hash_LDADD) $(LIBS)
+srf_extract_linear$(EXEEXT): $(srf_extract_linear_OBJECTS) $(srf_extract_linear_DEPENDENCIES) 
+	@rm -f srf_extract_linear$(EXEEXT)
+	$(LINK) $(srf_extract_linear_LDFLAGS) $(srf_extract_linear_OBJECTS) $(srf_extract_linear_LDADD) $(LIBS)
+srf_filter$(EXEEXT): $(srf_filter_OBJECTS) $(srf_filter_DEPENDENCIES) 
+	@rm -f srf_filter$(EXEEXT)
+	$(LINK) $(srf_filter_LDFLAGS) $(srf_filter_OBJECTS) $(srf_filter_LDADD) $(LIBS)
+srf_index_hash$(EXEEXT): $(srf_index_hash_OBJECTS) $(srf_index_hash_DEPENDENCIES) 
+	@rm -f srf_index_hash$(EXEEXT)
+	$(LINK) $(srf_index_hash_LDFLAGS) $(srf_index_hash_OBJECTS) $(srf_index_hash_LDADD) $(LIBS)
+srf_info$(EXEEXT): $(srf_info_OBJECTS) $(srf_info_DEPENDENCIES) 
+	@rm -f srf_info$(EXEEXT)
+	$(LINK) $(srf_info_LDFLAGS) $(srf_info_OBJECTS) $(srf_info_LDADD) $(LIBS)
+srf_list$(EXEEXT): $(srf_list_OBJECTS) $(srf_list_DEPENDENCIES) 
+	@rm -f srf_list$(EXEEXT)
+	$(LINK) $(srf_list_LDFLAGS) $(srf_list_OBJECTS) $(srf_list_LDADD) $(LIBS)
+trace_dump$(EXEEXT): $(trace_dump_OBJECTS) $(trace_dump_DEPENDENCIES) 
+	@rm -f trace_dump$(EXEEXT)
+	$(LINK) $(trace_dump_LDFLAGS) $(trace_dump_OBJECTS) $(trace_dump_LDADD) $(LIBS)
+ztr_dump$(EXEEXT): $(ztr_dump_OBJECTS) $(ztr_dump_DEPENDENCIES) 
+	@rm -f ztr_dump$(EXEEXT)
+	$(LINK) $(ztr_dump_LDFLAGS) $(ztr_dump_OBJECTS) $(ztr_dump_LDADD) $(LIBS)
+
+mostlyclean-compile:
+	-rm -f *.$(OBJEXT)
+
+distclean-compile:
+	-rm -f *.tab.c
+
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/append_sff.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/convert_trace.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/extract_fastq.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/extract_qual.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/extract_seq.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/get_comment.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/hash_extract.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/hash_list.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/hash_sff.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/hash_tar.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/index_tar.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/makeSCF.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/scf_dump.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/scf_info.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/scf_update.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/srf2fasta.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/srf2fastq.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/srf_dump_all.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/srf_extract_hash.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/srf_extract_linear.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/srf_filter.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/srf_index_hash.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/srf_info.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/srf_list.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/trace_dump.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/ztr_dump.Po@am__quote@
+
+.c.o:
+@am__fastdepCC_TRUE@	if $(COMPILE) -MT $@ -MD -MP -MF "$(DEPDIR)/$*.Tpo" -c -o $@ $<; \
+@am__fastdepCC_TRUE@	then mv -f "$(DEPDIR)/$*.Tpo" "$(DEPDIR)/$*.Po"; else rm -f "$(DEPDIR)/$*.Tpo"; exit 1; fi
+@AMDEP_TRUE@@am__fastdepCC_FALSE@	source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
+@AMDEP_TRUE@@am__fastdepCC_FALSE@	DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+@am__fastdepCC_FALSE@	$(COMPILE) -c $<
+
+.c.obj:
+@am__fastdepCC_TRUE@	if $(COMPILE) -MT $@ -MD -MP -MF "$(DEPDIR)/$*.Tpo" -c -o $@ `$(CYGPATH_W) '$<'`; \
+@am__fastdepCC_TRUE@	then mv -f "$(DEPDIR)/$*.Tpo" "$(DEPDIR)/$*.Po"; else rm -f "$(DEPDIR)/$*.Tpo"; exit 1; fi
+@AMDEP_TRUE@@am__fastdepCC_FALSE@	source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
+@AMDEP_TRUE@@am__fastdepCC_FALSE@	DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+@am__fastdepCC_FALSE@	$(COMPILE) -c `$(CYGPATH_W) '$<'`
+
+.c.lo:
+@am__fastdepCC_TRUE@	if $(LTCOMPILE) -MT $@ -MD -MP -MF "$(DEPDIR)/$*.Tpo" -c -o $@ $<; \
+@am__fastdepCC_TRUE@	then mv -f "$(DEPDIR)/$*.Tpo" "$(DEPDIR)/$*.Plo"; else rm -f "$(DEPDIR)/$*.Tpo"; exit 1; fi
+@AMDEP_TRUE@@am__fastdepCC_FALSE@	source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@
+@AMDEP_TRUE@@am__fastdepCC_FALSE@	DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+@am__fastdepCC_FALSE@	$(LTCOMPILE) -c -o $@ $<
+
+mostlyclean-libtool:
+	-rm -f *.lo
+
+clean-libtool:
+	-rm -rf .libs _libs
+
+distclean-libtool:
+	-rm -f libtool
+uninstall-info-am:
+
+ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES)
+	list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
+	unique=`for i in $$list; do \
+	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
+	  done | \
+	  $(AWK) '    { files[$$0] = 1; } \
+	       END { for (i in files) print i; }'`; \
+	mkid -fID $$unique
+tags: TAGS
+
+TAGS:  $(HEADERS) $(SOURCES)  $(TAGS_DEPENDENCIES) \
+		$(TAGS_FILES) $(LISP)
+	tags=; \
+	here=`pwd`; \
+	list='$(SOURCES) $(HEADERS)  $(LISP) $(TAGS_FILES)'; \
+	unique=`for i in $$list; do \
+	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
+	  done | \
+	  $(AWK) '    { files[$$0] = 1; } \
+	       END { for (i in files) print i; }'`; \
+	if test -z "$(ETAGS_ARGS)$$tags$$unique"; then :; else \
+	  test -n "$$unique" || unique=$$empty_fix; \
+	  $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
+	    $$tags $$unique; \
+	fi
+ctags: CTAGS
+CTAGS:  $(HEADERS) $(SOURCES)  $(TAGS_DEPENDENCIES) \
+		$(TAGS_FILES) $(LISP)
+	tags=; \
+	here=`pwd`; \
+	list='$(SOURCES) $(HEADERS)  $(LISP) $(TAGS_FILES)'; \
+	unique=`for i in $$list; do \
+	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
+	  done | \
+	  $(AWK) '    { files[$$0] = 1; } \
+	       END { for (i in files) print i; }'`; \
+	test -z "$(CTAGS_ARGS)$$tags$$unique" \
+	  || $(CTAGS) $(CTAGSFLAGS) $(AM_CTAGSFLAGS) $(CTAGS_ARGS) \
+	     $$tags $$unique
+
+GTAGS:
+	here=`$(am__cd) $(top_builddir) && pwd` \
+	  && cd $(top_srcdir) \
+	  && gtags -i $(GTAGS_ARGS) $$here
+
+distclean-tags:
+	-rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
+
+distdir: $(DISTFILES)
+	@srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`; \
+	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's|.|.|g'`; \
+	list='$(DISTFILES)'; for file in $$list; do \
+	  case $$file in \
+	    $(srcdir)/*) file=`echo "$$file" | sed "s|^$$srcdirstrip/||"`;; \
+	    $(top_srcdir)/*) file=`echo "$$file" | sed "s|^$$topsrcdirstrip/|$(top_builddir)/|"`;; \
+	  esac; \
+	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+	  dir=`echo "$$file" | sed -e 's,/[^/]*$$,,'`; \
+	  if test "$$dir" != "$$file" && test "$$dir" != "."; then \
+	    dir="/$$dir"; \
+	    $(mkdir_p) "$(distdir)$$dir"; \
+	  else \
+	    dir=''; \
+	  fi; \
+	  if test -d $$d/$$file; then \
+	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
+	    fi; \
+	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
+	  else \
+	    test -f $(distdir)/$$file \
+	    || cp -p $$d/$$file $(distdir)/$$file \
+	    || exit 1; \
+	  fi; \
+	done
+check-am: all-am
+check: check-am
+all-am: Makefile $(PROGRAMS)
+installdirs:
+	for dir in "$(DESTDIR)$(bindir)"; do \
+	  test -z "$$dir" || $(mkdir_p) "$$dir"; \
+	done
+install: install-am
+install-exec: install-exec-am
+install-data: install-data-am
+uninstall: uninstall-am
+
+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-am
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+
+clean-generic:
+
+distclean-generic:
+	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
+clean: clean-am
+
+clean-am: clean-binPROGRAMS clean-generic clean-libtool mostlyclean-am
+
+distclean: distclean-am
+	-rm -rf ./$(DEPDIR)
+	-rm -f Makefile
+distclean-am: clean-am distclean-compile distclean-generic \
+	distclean-libtool distclean-tags
+
+dvi: dvi-am
+
+dvi-am:
+
+html: html-am
+
+info: info-am
+
+info-am:
+
+install-data-am:
+
+install-exec-am: install-binPROGRAMS
+
+install-info: install-info-am
+
+install-man:
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-am
+	-rm -rf ./$(DEPDIR)
+	-rm -f Makefile
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-am
+
+mostlyclean-am: mostlyclean-compile mostlyclean-generic \
+	mostlyclean-libtool
+
+pdf: pdf-am
+
+pdf-am:
+
+ps: ps-am
+
+ps-am:
+
+uninstall-am: uninstall-binPROGRAMS uninstall-info-am
+
+.PHONY: CTAGS GTAGS all all-am check check-am clean clean-binPROGRAMS \
+	clean-generic clean-libtool ctags distclean distclean-compile \
+	distclean-generic distclean-libtool distclean-tags distdir dvi \
+	dvi-am html html-am info info-am install install-am \
+	install-binPROGRAMS install-data install-data-am install-exec \
+	install-exec-am install-info install-info-am install-man \
+	install-strip installcheck installcheck-am installdirs \
+	maintainer-clean maintainer-clean-generic mostlyclean \
+	mostlyclean-compile mostlyclean-generic mostlyclean-libtool \
+	pdf pdf-am ps ps-am tags uninstall uninstall-am \
+	uninstall-binPROGRAMS uninstall-info-am
+
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT: