Mercurial > repos > dawe > srf2fastq
view srf2fastq/io_lib-1.12.2/progs/Makefile.in @ 0:d901c9f41a6a default tip
Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
author | dawe |
---|---|
date | Tue, 07 Jun 2011 17:48:05 -0400 |
parents | |
children |
line wrap: on
line source
# Makefile.in generated by automake 1.9.6 from Makefile.am. # @configure_input@ # Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, # 2003, 2004, 2005 Free Software Foundation, Inc. # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. # This program is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY, to the extent permitted by law; without # even the implied warranty of MERCHANTABILITY or FITNESS FOR A # PARTICULAR PURPOSE. @SET_MAKE@ srcdir = @srcdir@ top_srcdir = @top_srcdir@ VPATH = @srcdir@ pkgdatadir = $(datadir)/@PACKAGE@ pkglibdir = $(libdir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ top_builddir = .. am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd INSTALL = @INSTALL@ install_sh_DATA = $(install_sh) -c -m 644 install_sh_PROGRAM = $(install_sh) -c install_sh_SCRIPT = $(install_sh) -c INSTALL_HEADER = $(INSTALL_DATA) transform = $(program_transform_name) NORMAL_INSTALL = : PRE_INSTALL = : POST_INSTALL = : NORMAL_UNINSTALL = : PRE_UNINSTALL = : POST_UNINSTALL = : build_triplet = @build@ host_triplet = @host@ bin_PROGRAMS = convert_trace$(EXEEXT) makeSCF$(EXEEXT) \ extract_seq$(EXEEXT) extract_qual$(EXEEXT) \ extract_fastq$(EXEEXT) index_tar$(EXEEXT) scf_dump$(EXEEXT) \ scf_info$(EXEEXT) scf_update$(EXEEXT) get_comment$(EXEEXT) \ hash_tar$(EXEEXT) hash_extract$(EXEEXT) hash_list$(EXEEXT) \ trace_dump$(EXEEXT) hash_sff$(EXEEXT) append_sff$(EXEEXT) \ ztr_dump$(EXEEXT) srf_dump_all$(EXEEXT) \ srf_index_hash$(EXEEXT) srf_extract_linear$(EXEEXT) \ srf_extract_hash$(EXEEXT) srf2fastq$(EXEEXT) \ srf2fasta$(EXEEXT) srf_filter$(EXEEXT) srf_info$(EXEEXT) \ srf_list$(EXEEXT) subdir = progs DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/acinclude.m4 \ $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(install_sh) -d CONFIG_HEADER = $(top_builddir)/io_lib_config.h CONFIG_CLEAN_FILES = am__installdirs = "$(DESTDIR)$(bindir)" binPROGRAMS_INSTALL = $(INSTALL_PROGRAM) PROGRAMS = $(bin_PROGRAMS) am_append_sff_OBJECTS = append_sff.$(OBJEXT) append_sff_OBJECTS = $(am_append_sff_OBJECTS) append_sff_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la am_convert_trace_OBJECTS = convert_trace.$(OBJEXT) convert_trace_OBJECTS = $(am_convert_trace_OBJECTS) convert_trace_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la am_extract_fastq_OBJECTS = extract_fastq.$(OBJEXT) extract_fastq_OBJECTS = $(am_extract_fastq_OBJECTS) extract_fastq_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la am_extract_qual_OBJECTS = extract_qual.$(OBJEXT) extract_qual_OBJECTS = $(am_extract_qual_OBJECTS) extract_qual_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la am_extract_seq_OBJECTS = extract_seq.$(OBJEXT) extract_seq_OBJECTS = $(am_extract_seq_OBJECTS) extract_seq_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la am_get_comment_OBJECTS = get_comment.$(OBJEXT) get_comment_OBJECTS = $(am_get_comment_OBJECTS) get_comment_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la am_hash_extract_OBJECTS = hash_extract.$(OBJEXT) hash_extract_OBJECTS = $(am_hash_extract_OBJECTS) hash_extract_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la am_hash_list_OBJECTS = hash_list.$(OBJEXT) hash_list_OBJECTS = $(am_hash_list_OBJECTS) hash_list_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la am_hash_sff_OBJECTS = hash_sff.$(OBJEXT) hash_sff_OBJECTS = $(am_hash_sff_OBJECTS) hash_sff_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la am_hash_tar_OBJECTS = hash_tar.$(OBJEXT) hash_tar_OBJECTS = $(am_hash_tar_OBJECTS) hash_tar_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la am_index_tar_OBJECTS = index_tar.$(OBJEXT) index_tar_OBJECTS = $(am_index_tar_OBJECTS) index_tar_LDADD = $(LDADD) am_makeSCF_OBJECTS = makeSCF.$(OBJEXT) makeSCF_OBJECTS = $(am_makeSCF_OBJECTS) makeSCF_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la am_scf_dump_OBJECTS = scf_dump.$(OBJEXT) scf_dump_OBJECTS = $(am_scf_dump_OBJECTS) scf_dump_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la am_scf_info_OBJECTS = scf_info.$(OBJEXT) scf_info_OBJECTS = $(am_scf_info_OBJECTS) scf_info_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la am_scf_update_OBJECTS = scf_update.$(OBJEXT) scf_update_OBJECTS = $(am_scf_update_OBJECTS) scf_update_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la am_srf2fasta_OBJECTS = srf2fasta.$(OBJEXT) srf2fasta_OBJECTS = $(am_srf2fasta_OBJECTS) srf2fasta_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la am_srf2fastq_OBJECTS = srf2fastq.$(OBJEXT) srf2fastq_OBJECTS = $(am_srf2fastq_OBJECTS) srf2fastq_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la am_srf_dump_all_OBJECTS = srf_dump_all.$(OBJEXT) srf_dump_all_OBJECTS = $(am_srf_dump_all_OBJECTS) srf_dump_all_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la am_srf_extract_hash_OBJECTS = srf_extract_hash.$(OBJEXT) srf_extract_hash_OBJECTS = $(am_srf_extract_hash_OBJECTS) srf_extract_hash_DEPENDENCIES = \ $(top_builddir)/io_lib/libstaden-read.la am_srf_extract_linear_OBJECTS = srf_extract_linear.$(OBJEXT) srf_extract_linear_OBJECTS = $(am_srf_extract_linear_OBJECTS) srf_extract_linear_DEPENDENCIES = \ $(top_builddir)/io_lib/libstaden-read.la am_srf_filter_OBJECTS = srf_filter.$(OBJEXT) srf_filter_OBJECTS = $(am_srf_filter_OBJECTS) srf_filter_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la am_srf_index_hash_OBJECTS = srf_index_hash.$(OBJEXT) srf_index_hash_OBJECTS = $(am_srf_index_hash_OBJECTS) srf_index_hash_DEPENDENCIES = \ $(top_builddir)/io_lib/libstaden-read.la am_srf_info_OBJECTS = srf_info.$(OBJEXT) srf_info_OBJECTS = $(am_srf_info_OBJECTS) srf_info_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la am_srf_list_OBJECTS = srf_list.$(OBJEXT) srf_list_OBJECTS = $(am_srf_list_OBJECTS) srf_list_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la am_trace_dump_OBJECTS = trace_dump.$(OBJEXT) trace_dump_OBJECTS = $(am_trace_dump_OBJECTS) trace_dump_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la am_ztr_dump_OBJECTS = ztr_dump.$(OBJEXT) ztr_dump_OBJECTS = $(am_ztr_dump_OBJECTS) ztr_dump_DEPENDENCIES = $(top_builddir)/io_lib/libstaden-read.la DEFAULT_INCLUDES = -I. -I$(srcdir) -I$(top_builddir) depcomp = $(SHELL) $(top_srcdir)/depcomp am__depfiles_maybe = depfiles COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \ $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS) LTCOMPILE = $(LIBTOOL) --tag=CC --mode=compile $(CC) $(DEFS) \ $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) \ $(AM_CFLAGS) $(CFLAGS) CCLD = $(CC) LINK = $(LIBTOOL) --tag=CC --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ $(AM_LDFLAGS) $(LDFLAGS) -o $@ SOURCES = $(append_sff_SOURCES) $(convert_trace_SOURCES) \ $(extract_fastq_SOURCES) $(extract_qual_SOURCES) \ $(extract_seq_SOURCES) $(get_comment_SOURCES) \ $(hash_extract_SOURCES) $(hash_list_SOURCES) \ $(hash_sff_SOURCES) $(hash_tar_SOURCES) $(index_tar_SOURCES) \ $(makeSCF_SOURCES) $(scf_dump_SOURCES) $(scf_info_SOURCES) \ $(scf_update_SOURCES) $(srf2fasta_SOURCES) \ $(srf2fastq_SOURCES) $(srf_dump_all_SOURCES) \ $(srf_extract_hash_SOURCES) $(srf_extract_linear_SOURCES) \ $(srf_filter_SOURCES) $(srf_index_hash_SOURCES) \ $(srf_info_SOURCES) $(srf_list_SOURCES) $(trace_dump_SOURCES) \ $(ztr_dump_SOURCES) DIST_SOURCES = $(append_sff_SOURCES) $(convert_trace_SOURCES) \ $(extract_fastq_SOURCES) $(extract_qual_SOURCES) \ $(extract_seq_SOURCES) $(get_comment_SOURCES) \ $(hash_extract_SOURCES) $(hash_list_SOURCES) \ $(hash_sff_SOURCES) $(hash_tar_SOURCES) $(index_tar_SOURCES) \ $(makeSCF_SOURCES) $(scf_dump_SOURCES) $(scf_info_SOURCES) \ $(scf_update_SOURCES) $(srf2fasta_SOURCES) \ $(srf2fastq_SOURCES) $(srf_dump_all_SOURCES) \ $(srf_extract_hash_SOURCES) $(srf_extract_linear_SOURCES) \ $(srf_filter_SOURCES) $(srf_index_hash_SOURCES) \ $(srf_info_SOURCES) $(srf_list_SOURCES) $(trace_dump_SOURCES) \ $(ztr_dump_SOURCES) ETAGS = etags CTAGS = ctags DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) ACLOCAL = @ACLOCAL@ AMDEP_FALSE = @AMDEP_FALSE@ AMDEP_TRUE = @AMDEP_TRUE@ AMTAR = @AMTAR@ AR = @AR@ AUTOCONF = @AUTOCONF@ AUTOHEADER = @AUTOHEADER@ AUTOMAKE = @AUTOMAKE@ AWK = @AWK@ CC = @CC@ CCDEPMODE = @CCDEPMODE@ CFLAGS = @CFLAGS@ CPP = @CPP@ CPPFLAGS = @CPPFLAGS@ CXX = @CXX@ CXXCPP = @CXXCPP@ CXXDEPMODE = @CXXDEPMODE@ CXXFLAGS = @CXXFLAGS@ CYGPATH_W = @CYGPATH_W@ DEFS = @DEFS@ DEPDIR = @DEPDIR@ ECHO = @ECHO@ ECHO_C = @ECHO_C@ ECHO_N = @ECHO_N@ ECHO_T = @ECHO_T@ EGREP = @EGREP@ EXEEXT = @EXEEXT@ F77 = @F77@ FFLAGS = @FFLAGS@ GREP = @GREP@ HAVE_ZLIB_FALSE = @HAVE_ZLIB_FALSE@ HAVE_ZLIB_TRUE = @HAVE_ZLIB_TRUE@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ INSTALL_SCRIPT = @INSTALL_SCRIPT@ INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@ LDFLAGS = @LDFLAGS@ LIBCURL = @LIBCURL@ LIBCURL_CPPFLAGS = @LIBCURL_CPPFLAGS@ LIBOBJS = @LIBOBJS@ LIBS = @LIBS@ LIBTOOL = @LIBTOOL@ LIBZ = @LIBZ@ LN_S = @LN_S@ LTLIBOBJS = @LTLIBOBJS@ MAINT = @MAINT@ MAINTAINER_MODE_FALSE = @MAINTAINER_MODE_FALSE@ MAINTAINER_MODE_TRUE = @MAINTAINER_MODE_TRUE@ MAKEINFO = @MAKEINFO@ OBJEXT = @OBJEXT@ PACKAGE = @PACKAGE@ PACKAGE_BUGREPORT = @PACKAGE_BUGREPORT@ PACKAGE_NAME = @PACKAGE_NAME@ PACKAGE_STRING = @PACKAGE_STRING@ PACKAGE_TARNAME = @PACKAGE_TARNAME@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ RANLIB = @RANLIB@ SET_MAKE = @SET_MAKE@ SHELL = @SHELL@ STRIP = @STRIP@ VERSION = @VERSION@ VERS_AGE = @VERS_AGE@ VERS_CURRENT = @VERS_CURRENT@ VERS_REVISION = @VERS_REVISION@ _libcurl_config = @_libcurl_config@ ac_ct_CC = @ac_ct_CC@ ac_ct_CXX = @ac_ct_CXX@ ac_ct_F77 = @ac_ct_F77@ am__fastdepCC_FALSE = @am__fastdepCC_FALSE@ am__fastdepCC_TRUE = @am__fastdepCC_TRUE@ am__fastdepCXX_FALSE = @am__fastdepCXX_FALSE@ am__fastdepCXX_TRUE = @am__fastdepCXX_TRUE@ am__include = @am__include@ am__leading_dot = @am__leading_dot@ am__quote = @am__quote@ am__tar = @am__tar@ am__untar = @am__untar@ bindir = @bindir@ build = @build@ build_alias = @build_alias@ build_cpu = @build_cpu@ build_os = @build_os@ build_vendor = @build_vendor@ datadir = @datadir@ datarootdir = @datarootdir@ docdir = @docdir@ dvidir = @dvidir@ exec_prefix = @exec_prefix@ host = @host@ host_alias = @host_alias@ host_cpu = @host_cpu@ host_os = @host_os@ host_vendor = @host_vendor@ htmldir = @htmldir@ includedir = @includedir@ infodir = @infodir@ install_sh = @install_sh@ libdir = @libdir@ libexecdir = @libexecdir@ localedir = @localedir@ localstatedir = @localstatedir@ mandir = @mandir@ mkdir_p = @mkdir_p@ oldincludedir = @oldincludedir@ pdfdir = @pdfdir@ prefix = @prefix@ program_transform_name = @program_transform_name@ psdir = @psdir@ sbindir = @sbindir@ sharedstatedir = @sharedstatedir@ sysconfdir = @sysconfdir@ target_alias = @target_alias@ convert_trace_SOURCES = convert_trace.c convert_trace_LDADD = $(top_builddir)/io_lib/libstaden-read.la get_comment_SOURCES = get_comment.c get_comment_LDADD = $(top_builddir)/io_lib/libstaden-read.la makeSCF_SOURCES = makeSCF.c makeSCF_LDADD = $(top_builddir)/io_lib/libstaden-read.la extract_seq_SOURCES = extract_seq.c extract_seq_LDADD = $(top_builddir)/io_lib/libstaden-read.la extract_qual_SOURCES = extract_qual.c extract_qual_LDADD = $(top_builddir)/io_lib/libstaden-read.la extract_fastq_SOURCES = extract_fastq.c extract_fastq_LDADD = $(top_builddir)/io_lib/libstaden-read.la index_tar_SOURCES = index_tar.c scf_dump_SOURCES = scf_dump.c scf_dump_LDADD = $(top_builddir)/io_lib/libstaden-read.la scf_info_SOURCES = scf_info.c scf_info_LDADD = $(top_builddir)/io_lib/libstaden-read.la scf_update_SOURCES = scf_update.c scf_update_LDADD = $(top_builddir)/io_lib/libstaden-read.la hash_tar_SOURCES = hash_tar.c hash_tar_LDADD = $(top_builddir)/io_lib/libstaden-read.la hash_list_SOURCES = hash_list.c hash_list_LDADD = $(top_builddir)/io_lib/libstaden-read.la hash_sff_SOURCES = hash_sff.c hash_sff_LDADD = $(top_builddir)/io_lib/libstaden-read.la append_sff_SOURCES = append_sff.c append_sff_LDADD = $(top_builddir)/io_lib/libstaden-read.la hash_extract_SOURCES = hash_extract.c hash_extract_LDADD = $(top_builddir)/io_lib/libstaden-read.la trace_dump_SOURCES = trace_dump.c trace_dump_LDADD = $(top_builddir)/io_lib/libstaden-read.la ztr_dump_SOURCES = ztr_dump.c ztr_dump_LDADD = $(top_builddir)/io_lib/libstaden-read.la srf2fastq_SOURCES = srf2fastq.c srf2fastq_LDADD = $(top_builddir)/io_lib/libstaden-read.la srf2fasta_SOURCES = srf2fasta.c srf2fasta_LDADD = $(top_builddir)/io_lib/libstaden-read.la srf_dump_all_SOURCES = srf_dump_all.c srf_dump_all_LDADD = $(top_builddir)/io_lib/libstaden-read.la srf_extract_linear_SOURCES = srf_extract_linear.c srf_extract_linear_LDADD = $(top_builddir)/io_lib/libstaden-read.la srf_extract_hash_SOURCES = srf_extract_hash.c srf_extract_hash_LDADD = $(top_builddir)/io_lib/libstaden-read.la srf_index_hash_SOURCES = srf_index_hash.c srf_index_hash_LDADD = $(top_builddir)/io_lib/libstaden-read.la srf_filter_SOURCES = srf_filter.c srf_filter_LDADD = $(top_builddir)/io_lib/libstaden-read.la srf_info_SOURCES = srf_info.c srf_info_LDADD = $(top_builddir)/io_lib/libstaden-read.la srf_list_SOURCES = srf_list.c srf_list_LDADD = $(top_builddir)/io_lib/libstaden-read.la INCLUDES = -I${top_srcdir} all: all-am .SUFFIXES: .SUFFIXES: .c .lo .o .obj $(srcdir)/Makefile.in: @MAINTAINER_MODE_TRUE@ $(srcdir)/Makefile.am $(am__configure_deps) @for dep in $?; do \ case '$(am__configure_deps)' in \ *$$dep*) \ cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh \ && exit 0; \ exit 1;; \ esac; \ done; \ echo ' cd $(top_srcdir) && $(AUTOMAKE) --foreign progs/Makefile'; \ cd $(top_srcdir) && \ $(AUTOMAKE) --foreign progs/Makefile .PRECIOUS: Makefile Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status @case '$?' in \ *config.status*) \ cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \ *) \ echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ esac; $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh $(top_srcdir)/configure: @MAINTAINER_MODE_TRUE@ $(am__configure_deps) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh $(ACLOCAL_M4): @MAINTAINER_MODE_TRUE@ $(am__aclocal_m4_deps) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh install-binPROGRAMS: $(bin_PROGRAMS) @$(NORMAL_INSTALL) test -z "$(bindir)" || $(mkdir_p) "$(DESTDIR)$(bindir)" @list='$(bin_PROGRAMS)'; for p in $$list; do \ p1=`echo $$p|sed 's/$(EXEEXT)$$//'`; \ if test -f $$p \ || test -f $$p1 \ ; then \ f=`echo "$$p1" | sed 's,^.*/,,;$(transform);s/$$/$(EXEEXT)/'`; \ echo " $(INSTALL_PROGRAM_ENV) $(LIBTOOL) --mode=install $(binPROGRAMS_INSTALL) '$$p' '$(DESTDIR)$(bindir)/$$f'"; \ $(INSTALL_PROGRAM_ENV) $(LIBTOOL) --mode=install $(binPROGRAMS_INSTALL) "$$p" "$(DESTDIR)$(bindir)/$$f" || exit 1; \ else :; fi; \ done uninstall-binPROGRAMS: @$(NORMAL_UNINSTALL) @list='$(bin_PROGRAMS)'; for p in $$list; do \ f=`echo "$$p" | sed 's,^.*/,,;s/$(EXEEXT)$$//;$(transform);s/$$/$(EXEEXT)/'`; \ echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \ rm -f "$(DESTDIR)$(bindir)/$$f"; \ done clean-binPROGRAMS: @list='$(bin_PROGRAMS)'; for p in $$list; do \ f=`echo $$p|sed 's/$(EXEEXT)$$//'`; \ echo " rm -f $$p $$f"; \ rm -f $$p $$f ; \ done append_sff$(EXEEXT): $(append_sff_OBJECTS) $(append_sff_DEPENDENCIES) @rm -f append_sff$(EXEEXT) $(LINK) $(append_sff_LDFLAGS) $(append_sff_OBJECTS) $(append_sff_LDADD) $(LIBS) convert_trace$(EXEEXT): $(convert_trace_OBJECTS) $(convert_trace_DEPENDENCIES) @rm -f convert_trace$(EXEEXT) $(LINK) $(convert_trace_LDFLAGS) $(convert_trace_OBJECTS) $(convert_trace_LDADD) $(LIBS) extract_fastq$(EXEEXT): $(extract_fastq_OBJECTS) $(extract_fastq_DEPENDENCIES) @rm -f extract_fastq$(EXEEXT) $(LINK) $(extract_fastq_LDFLAGS) $(extract_fastq_OBJECTS) $(extract_fastq_LDADD) $(LIBS) extract_qual$(EXEEXT): $(extract_qual_OBJECTS) $(extract_qual_DEPENDENCIES) @rm -f extract_qual$(EXEEXT) $(LINK) $(extract_qual_LDFLAGS) $(extract_qual_OBJECTS) $(extract_qual_LDADD) $(LIBS) extract_seq$(EXEEXT): $(extract_seq_OBJECTS) $(extract_seq_DEPENDENCIES) @rm -f extract_seq$(EXEEXT) $(LINK) $(extract_seq_LDFLAGS) $(extract_seq_OBJECTS) $(extract_seq_LDADD) $(LIBS) get_comment$(EXEEXT): $(get_comment_OBJECTS) $(get_comment_DEPENDENCIES) @rm -f get_comment$(EXEEXT) $(LINK) $(get_comment_LDFLAGS) $(get_comment_OBJECTS) $(get_comment_LDADD) $(LIBS) hash_extract$(EXEEXT): $(hash_extract_OBJECTS) $(hash_extract_DEPENDENCIES) @rm -f hash_extract$(EXEEXT) $(LINK) $(hash_extract_LDFLAGS) $(hash_extract_OBJECTS) $(hash_extract_LDADD) $(LIBS) hash_list$(EXEEXT): $(hash_list_OBJECTS) $(hash_list_DEPENDENCIES) @rm -f hash_list$(EXEEXT) $(LINK) $(hash_list_LDFLAGS) $(hash_list_OBJECTS) $(hash_list_LDADD) $(LIBS) hash_sff$(EXEEXT): $(hash_sff_OBJECTS) $(hash_sff_DEPENDENCIES) @rm -f hash_sff$(EXEEXT) $(LINK) $(hash_sff_LDFLAGS) $(hash_sff_OBJECTS) $(hash_sff_LDADD) $(LIBS) hash_tar$(EXEEXT): $(hash_tar_OBJECTS) $(hash_tar_DEPENDENCIES) @rm -f hash_tar$(EXEEXT) $(LINK) $(hash_tar_LDFLAGS) $(hash_tar_OBJECTS) $(hash_tar_LDADD) $(LIBS) index_tar$(EXEEXT): $(index_tar_OBJECTS) $(index_tar_DEPENDENCIES) @rm -f index_tar$(EXEEXT) $(LINK) $(index_tar_LDFLAGS) $(index_tar_OBJECTS) $(index_tar_LDADD) $(LIBS) makeSCF$(EXEEXT): $(makeSCF_OBJECTS) $(makeSCF_DEPENDENCIES) @rm -f makeSCF$(EXEEXT) $(LINK) $(makeSCF_LDFLAGS) $(makeSCF_OBJECTS) $(makeSCF_LDADD) $(LIBS) scf_dump$(EXEEXT): $(scf_dump_OBJECTS) $(scf_dump_DEPENDENCIES) @rm -f scf_dump$(EXEEXT) $(LINK) $(scf_dump_LDFLAGS) $(scf_dump_OBJECTS) $(scf_dump_LDADD) $(LIBS) scf_info$(EXEEXT): $(scf_info_OBJECTS) $(scf_info_DEPENDENCIES) @rm -f scf_info$(EXEEXT) $(LINK) $(scf_info_LDFLAGS) $(scf_info_OBJECTS) $(scf_info_LDADD) $(LIBS) scf_update$(EXEEXT): $(scf_update_OBJECTS) $(scf_update_DEPENDENCIES) @rm -f scf_update$(EXEEXT) $(LINK) $(scf_update_LDFLAGS) $(scf_update_OBJECTS) $(scf_update_LDADD) $(LIBS) srf2fasta$(EXEEXT): $(srf2fasta_OBJECTS) $(srf2fasta_DEPENDENCIES) @rm -f srf2fasta$(EXEEXT) $(LINK) $(srf2fasta_LDFLAGS) $(srf2fasta_OBJECTS) $(srf2fasta_LDADD) $(LIBS) srf2fastq$(EXEEXT): $(srf2fastq_OBJECTS) $(srf2fastq_DEPENDENCIES) @rm -f srf2fastq$(EXEEXT) $(LINK) $(srf2fastq_LDFLAGS) $(srf2fastq_OBJECTS) $(srf2fastq_LDADD) $(LIBS) srf_dump_all$(EXEEXT): $(srf_dump_all_OBJECTS) $(srf_dump_all_DEPENDENCIES) @rm -f srf_dump_all$(EXEEXT) $(LINK) $(srf_dump_all_LDFLAGS) $(srf_dump_all_OBJECTS) $(srf_dump_all_LDADD) $(LIBS) srf_extract_hash$(EXEEXT): $(srf_extract_hash_OBJECTS) $(srf_extract_hash_DEPENDENCIES) @rm -f srf_extract_hash$(EXEEXT) $(LINK) $(srf_extract_hash_LDFLAGS) $(srf_extract_hash_OBJECTS) $(srf_extract_hash_LDADD) $(LIBS) srf_extract_linear$(EXEEXT): $(srf_extract_linear_OBJECTS) $(srf_extract_linear_DEPENDENCIES) @rm -f srf_extract_linear$(EXEEXT) $(LINK) $(srf_extract_linear_LDFLAGS) $(srf_extract_linear_OBJECTS) $(srf_extract_linear_LDADD) $(LIBS) srf_filter$(EXEEXT): $(srf_filter_OBJECTS) $(srf_filter_DEPENDENCIES) @rm -f srf_filter$(EXEEXT) $(LINK) $(srf_filter_LDFLAGS) $(srf_filter_OBJECTS) $(srf_filter_LDADD) $(LIBS) srf_index_hash$(EXEEXT): $(srf_index_hash_OBJECTS) $(srf_index_hash_DEPENDENCIES) @rm -f srf_index_hash$(EXEEXT) $(LINK) $(srf_index_hash_LDFLAGS) $(srf_index_hash_OBJECTS) $(srf_index_hash_LDADD) $(LIBS) srf_info$(EXEEXT): $(srf_info_OBJECTS) $(srf_info_DEPENDENCIES) @rm -f srf_info$(EXEEXT) $(LINK) $(srf_info_LDFLAGS) $(srf_info_OBJECTS) $(srf_info_LDADD) $(LIBS) srf_list$(EXEEXT): $(srf_list_OBJECTS) $(srf_list_DEPENDENCIES) @rm -f srf_list$(EXEEXT) $(LINK) $(srf_list_LDFLAGS) $(srf_list_OBJECTS) $(srf_list_LDADD) $(LIBS) trace_dump$(EXEEXT): $(trace_dump_OBJECTS) $(trace_dump_DEPENDENCIES) @rm -f trace_dump$(EXEEXT) $(LINK) $(trace_dump_LDFLAGS) $(trace_dump_OBJECTS) $(trace_dump_LDADD) $(LIBS) ztr_dump$(EXEEXT): $(ztr_dump_OBJECTS) $(ztr_dump_DEPENDENCIES) @rm -f ztr_dump$(EXEEXT) $(LINK) $(ztr_dump_LDFLAGS) $(ztr_dump_OBJECTS) $(ztr_dump_LDADD) $(LIBS) mostlyclean-compile: -rm -f *.$(OBJEXT) distclean-compile: -rm -f *.tab.c @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/append_sff.Po@am__quote@ @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/convert_trace.Po@am__quote@ @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/extract_fastq.Po@am__quote@ @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/extract_qual.Po@am__quote@ @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/extract_seq.Po@am__quote@ @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/get_comment.Po@am__quote@ @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/hash_extract.Po@am__quote@ @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/hash_list.Po@am__quote@ @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/hash_sff.Po@am__quote@ @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/hash_tar.Po@am__quote@ @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/index_tar.Po@am__quote@ @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/makeSCF.Po@am__quote@ @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/scf_dump.Po@am__quote@ @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/scf_info.Po@am__quote@ @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/scf_update.Po@am__quote@ @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/srf2fasta.Po@am__quote@ @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/srf2fastq.Po@am__quote@ @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/srf_dump_all.Po@am__quote@ @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/srf_extract_hash.Po@am__quote@ @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/srf_extract_linear.Po@am__quote@ @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/srf_filter.Po@am__quote@ @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/srf_index_hash.Po@am__quote@ @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/srf_info.Po@am__quote@ @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/srf_list.Po@am__quote@ @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/trace_dump.Po@am__quote@ @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/ztr_dump.Po@am__quote@ .c.o: @am__fastdepCC_TRUE@ if $(COMPILE) -MT $@ -MD -MP -MF "$(DEPDIR)/$*.Tpo" -c -o $@ $<; \ @am__fastdepCC_TRUE@ then mv -f "$(DEPDIR)/$*.Tpo" "$(DEPDIR)/$*.Po"; else rm -f "$(DEPDIR)/$*.Tpo"; exit 1; fi @AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ @am__fastdepCC_FALSE@ $(COMPILE) -c $< .c.obj: @am__fastdepCC_TRUE@ if $(COMPILE) -MT $@ -MD -MP -MF "$(DEPDIR)/$*.Tpo" -c -o $@ `$(CYGPATH_W) '$<'`; \ @am__fastdepCC_TRUE@ then mv -f "$(DEPDIR)/$*.Tpo" "$(DEPDIR)/$*.Po"; else rm -f "$(DEPDIR)/$*.Tpo"; exit 1; fi @AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ @am__fastdepCC_FALSE@ $(COMPILE) -c `$(CYGPATH_W) '$<'` .c.lo: @am__fastdepCC_TRUE@ if $(LTCOMPILE) -MT $@ -MD -MP -MF "$(DEPDIR)/$*.Tpo" -c -o $@ $<; \ @am__fastdepCC_TRUE@ then mv -f "$(DEPDIR)/$*.Tpo" "$(DEPDIR)/$*.Plo"; else rm -f "$(DEPDIR)/$*.Tpo"; exit 1; fi @AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ @am__fastdepCC_FALSE@ $(LTCOMPILE) -c -o $@ $< mostlyclean-libtool: -rm -f *.lo clean-libtool: -rm -rf .libs _libs distclean-libtool: -rm -f libtool uninstall-info-am: ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES) list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \ unique=`for i in $$list; do \ if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \ done | \ $(AWK) ' { files[$$0] = 1; } \ END { for (i in files) print i; }'`; \ mkid -fID $$unique tags: TAGS TAGS: $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \ $(TAGS_FILES) $(LISP) tags=; \ here=`pwd`; \ list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \ unique=`for i in $$list; do \ if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \ done | \ $(AWK) ' { files[$$0] = 1; } \ END { for (i in files) print i; }'`; \ if test -z "$(ETAGS_ARGS)$$tags$$unique"; then :; else \ test -n "$$unique" || unique=$$empty_fix; \ $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \ $$tags $$unique; \ fi ctags: CTAGS CTAGS: $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \ $(TAGS_FILES) $(LISP) tags=; \ here=`pwd`; \ list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \ unique=`for i in $$list; do \ if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \ done | \ $(AWK) ' { files[$$0] = 1; } \ END { for (i in files) print i; }'`; \ test -z "$(CTAGS_ARGS)$$tags$$unique" \ || $(CTAGS) $(CTAGSFLAGS) $(AM_CTAGSFLAGS) $(CTAGS_ARGS) \ $$tags $$unique GTAGS: here=`$(am__cd) $(top_builddir) && pwd` \ && cd $(top_srcdir) \ && gtags -i $(GTAGS_ARGS) $$here distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags distdir: $(DISTFILES) @srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`; \ topsrcdirstrip=`echo "$(top_srcdir)" | sed 's|.|.|g'`; \ list='$(DISTFILES)'; for file in $$list; do \ case $$file in \ $(srcdir)/*) file=`echo "$$file" | sed "s|^$$srcdirstrip/||"`;; \ $(top_srcdir)/*) file=`echo "$$file" | sed "s|^$$topsrcdirstrip/|$(top_builddir)/|"`;; \ esac; \ if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \ dir=`echo "$$file" | sed -e 's,/[^/]*$$,,'`; \ if test "$$dir" != "$$file" && test "$$dir" != "."; then \ dir="/$$dir"; \ $(mkdir_p) "$(distdir)$$dir"; \ else \ dir=''; \ fi; \ if test -d $$d/$$file; then \ if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \ cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \ fi; \ cp -pR $$d/$$file $(distdir)$$dir || exit 1; \ else \ test -f $(distdir)/$$file \ || cp -p $$d/$$file $(distdir)/$$file \ || exit 1; \ fi; \ done check-am: all-am check: check-am all-am: Makefile $(PROGRAMS) installdirs: for dir in "$(DESTDIR)$(bindir)"; do \ test -z "$$dir" || $(mkdir_p) "$$dir"; \ done install: install-am install-exec: install-exec-am install-data: install-data-am uninstall: uninstall-am install-am: all-am @$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am installcheck: installcheck-am install-strip: $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ `test -z '$(STRIP)' || \ echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install mostlyclean-generic: clean-generic: distclean-generic: -test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES) maintainer-clean-generic: @echo "This command is intended for maintainers to use" @echo "it deletes files that may require special tools to rebuild." clean: clean-am clean-am: clean-binPROGRAMS clean-generic clean-libtool mostlyclean-am distclean: distclean-am -rm -rf ./$(DEPDIR) -rm -f Makefile distclean-am: clean-am distclean-compile distclean-generic \ distclean-libtool distclean-tags dvi: dvi-am dvi-am: html: html-am info: info-am info-am: install-data-am: install-exec-am: install-binPROGRAMS install-info: install-info-am install-man: installcheck-am: maintainer-clean: maintainer-clean-am -rm -rf ./$(DEPDIR) -rm -f Makefile maintainer-clean-am: distclean-am maintainer-clean-generic mostlyclean: mostlyclean-am mostlyclean-am: mostlyclean-compile mostlyclean-generic \ mostlyclean-libtool pdf: pdf-am pdf-am: ps: ps-am ps-am: uninstall-am: uninstall-binPROGRAMS uninstall-info-am .PHONY: CTAGS GTAGS all all-am check check-am clean clean-binPROGRAMS \ clean-generic clean-libtool ctags distclean distclean-compile \ distclean-generic distclean-libtool distclean-tags distdir dvi \ dvi-am html html-am info info-am install install-am \ install-binPROGRAMS install-data install-data-am install-exec \ install-exec-am install-info install-info-am install-man \ install-strip installcheck installcheck-am installdirs \ maintainer-clean maintainer-clean-generic mostlyclean \ mostlyclean-compile mostlyclean-generic mostlyclean-libtool \ pdf pdf-am ps ps-am tags uninstall uninstall-am \ uninstall-binPROGRAMS uninstall-info-am # Tell versions [3.59,3.63) of GNU make to not export all variables. # Otherwise a system limit (for SysV at least) may be exceeded. .NOEXPORT: