Mercurial > repos > dawe > srf2fastq
comparison srf2fastq/io_lib-1.12.2/tests/srf2fasta.test @ 0:d901c9f41a6a default tip
Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
| author | dawe |
|---|---|
| date | Tue, 07 Jun 2011 17:48:05 -0400 |
| parents | |
| children |
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| -1:000000000000 | 0:d901c9f41a6a |
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| 1 #!/bin/sh | |
| 2 if ! test -e $outdir | |
| 3 then | |
| 4 mkdir $outdir | |
| 5 fi | |
| 6 | |
| 7 $top_builddir/progs/srf2fasta $srcdir/data/proc.srf > $outdir/slx.fasta | |
| 8 cmp $outdir/slx.fasta $srcdir/data/slx.fasta || exit 1 | |
| 9 $top_builddir/progs/srf2fasta -C $srcdir/data/proc.srf > $outdir/slx.fasta | |
| 10 cmp $outdir/slx.fasta $srcdir/data/slx-C.fasta || exit 1 | |
| 11 | |
| 12 $top_builddir/progs/srf2fasta $srcdir/data/raw.srf > $outdir/slx.fasta | |
| 13 cmp $outdir/slx.fasta $srcdir/data/slx.fasta || exit 1 | |
| 14 $top_builddir/progs/srf2fasta -C $srcdir/data/raw.srf > $outdir/slx.fasta | |
| 15 cmp $outdir/slx.fasta $srcdir/data/slx-C.fasta || exit 1 | |
| 16 | |
| 17 $top_builddir/progs/srf2fasta $srcdir/data/both.srf > $outdir/slx.fasta | |
| 18 cmp $outdir/slx.fasta $srcdir/data/slx.fasta || exit 1 | |
| 19 $top_builddir/progs/srf2fasta -C $srcdir/data/both.srf > $outdir/slx.fasta | |
| 20 cmp $outdir/slx.fasta $srcdir/data/slx-C.fasta || exit 1 |