Mercurial > repos > dawe > srf2fastq

view srf2fastq/io_lib-1.12.2/tests/srf2fasta.test @ 0:d901c9f41a6a default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
author dawe
date Tue, 07 Jun 2011 17:48:05 -0400
parents
children
line wrap: on
line source

#!/bin/sh
if ! test -e $outdir
then
    mkdir $outdir
fi

$top_builddir/progs/srf2fasta $srcdir/data/proc.srf > $outdir/slx.fasta
cmp $outdir/slx.fasta $srcdir/data/slx.fasta || exit 1
$top_builddir/progs/srf2fasta -C $srcdir/data/proc.srf > $outdir/slx.fasta
cmp $outdir/slx.fasta $srcdir/data/slx-C.fasta || exit 1

$top_builddir/progs/srf2fasta $srcdir/data/raw.srf > $outdir/slx.fasta
cmp $outdir/slx.fasta $srcdir/data/slx.fasta || exit 1
$top_builddir/progs/srf2fasta -C $srcdir/data/raw.srf > $outdir/slx.fasta
cmp $outdir/slx.fasta $srcdir/data/slx-C.fasta || exit 1

$top_builddir/progs/srf2fasta $srcdir/data/both.srf > $outdir/slx.fasta
cmp $outdir/slx.fasta $srcdir/data/slx.fasta || exit 1
$top_builddir/progs/srf2fasta -C $srcdir/data/both.srf > $outdir/slx.fasta
cmp $outdir/slx.fasta $srcdir/data/slx-C.fasta || exit 1