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annotate srf2fastq/io_lib-1.12.2/tests/srf2fasta.test @ 0:d901c9f41a6a default tip

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Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
author dawe
date Tue, 07 Jun 2011 17:48:05 -0400
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d901c9f41a6a Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
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1 #!/bin/sh
d901c9f41a6a Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
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2 if ! test -e $outdir
d901c9f41a6a Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
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3 then
d901c9f41a6a Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
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4 mkdir $outdir
d901c9f41a6a Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
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5 fi
d901c9f41a6a Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
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d901c9f41a6a Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
dawe
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7 $top_builddir/progs/srf2fasta $srcdir/data/proc.srf > $outdir/slx.fasta
d901c9f41a6a Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
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8 cmp $outdir/slx.fasta $srcdir/data/slx.fasta || exit 1
d901c9f41a6a Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
dawe
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9 $top_builddir/progs/srf2fasta -C $srcdir/data/proc.srf > $outdir/slx.fasta
d901c9f41a6a Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
dawe
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10 cmp $outdir/slx.fasta $srcdir/data/slx-C.fasta || exit 1
d901c9f41a6a Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
dawe
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11
d901c9f41a6a Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
dawe
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12 $top_builddir/progs/srf2fasta $srcdir/data/raw.srf > $outdir/slx.fasta
d901c9f41a6a Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
dawe
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13 cmp $outdir/slx.fasta $srcdir/data/slx.fasta || exit 1
d901c9f41a6a Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
dawe
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14 $top_builddir/progs/srf2fasta -C $srcdir/data/raw.srf > $outdir/slx.fasta
d901c9f41a6a Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
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15 cmp $outdir/slx.fasta $srcdir/data/slx-C.fasta || exit 1
d901c9f41a6a Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
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16
d901c9f41a6a Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
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17 $top_builddir/progs/srf2fasta $srcdir/data/both.srf > $outdir/slx.fasta
d901c9f41a6a Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
dawe
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18 cmp $outdir/slx.fasta $srcdir/data/slx.fasta || exit 1
d901c9f41a6a Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
dawe
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19 $top_builddir/progs/srf2fasta -C $srcdir/data/both.srf > $outdir/slx.fasta
d901c9f41a6a Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
dawe
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20 cmp $outdir/slx.fasta $srcdir/data/slx-C.fasta || exit 1