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Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
author dawe
date Tue, 07 Jun 2011 17:48:05 -0400
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#!/bin/sh
$top_builddir/progs/srf2fastq $srcdir/data/proc.srf > $outdir/slx.fastq
cmp $outdir/slx.fastq $srcdir/data/slx.fastq || exit 1
$top_builddir/progs/srf2fastq -C $srcdir/data/proc.srf > $outdir/slx.fastq
cmp $outdir/slx.fastq $srcdir/data/slx-C.fastq || exit 1

$top_builddir/progs/srf2fastq $srcdir/data/raw.srf > $outdir/slx.fastq
cmp $outdir/slx.fastq $srcdir/data/slx.fastq || exit 1
$top_builddir/progs/srf2fastq -C $srcdir/data/raw.srf > $outdir/slx.fastq
cmp $outdir/slx.fastq $srcdir/data/slx-C.fastq || exit 1

$top_builddir/progs/srf2fastq $srcdir/data/both.srf > $outdir/slx.fastq
cmp $outdir/slx.fastq $srcdir/data/slx.fastq || exit 1
$top_builddir/progs/srf2fastq -C $srcdir/data/both.srf > $outdir/slx.fastq
cmp $outdir/slx.fastq $srcdir/data/slx-C.fastq || exit 1