Mercurial > repos > dereeper > beagle
comparison test-data/filelog.txt @ 0:a929ef8dea25 draft default tip
planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f
| author | dereeper |
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| date | Tue, 14 Aug 2018 07:59:19 -0400 |
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| -1:000000000000 | 0:a929ef8dea25 |
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| 1 beagle.jar (r1399) | |
| 2 Copyright (C) 2014 Brian L. Browning | |
| 3 Enter "java -jar beagle.jar" for a summary of command line arguments. | |
| 4 Start time: 10:43 AM CEST on 20 Jul 2018 | |
| 5 | |
| 6 Command line: java -Xmx1963m -jar beagle.jar | |
| 7 gt=/work/GALAXY/galaxy/database/files/071/dataset_71177.dat | |
| 8 phase-its=5 | |
| 9 impute-its=5 | |
| 10 out=out | |
| 11 | |
| 12 reference samples: 0 | |
| 13 target samples: 257 | |
| 14 singles: 257 | |
| 15 duos: 0 | |
| 16 trios: 0 | |
| 17 | |
| 18 Window 1 [ 3:15001183-19992016 ] | |
| 19 target markers: 3094 | |
| 20 | |
| 21 Starting burn-in iterations | |
| 22 | |
| 23 Window=1 Iteration=1 | |
| 24 Time for building model: 5 seconds | |
| 25 Time for sampling (singles): 5 seconds | |
| 26 Singles model | |
| 27 mean edges/level: 21 max edges/level: 39 | |
| 28 mean edges/node: 1.655 mean count/edge: 24 | |
| 29 | |
| 30 Window=1 Iteration=2 | |
| 31 Time for building model: 4 seconds | |
| 32 Time for sampling (singles): 5 seconds | |
| 33 Singles model | |
| 34 mean edges/level: 23 max edges/level: 46 | |
| 35 mean edges/node: 1.513 mean count/edge: 22 | |
| 36 | |
| 37 Window=1 Iteration=3 | |
| 38 Time for building model: 7 seconds | |
| 39 Time for sampling (singles): 6 seconds | |
| 40 Singles model | |
| 41 mean edges/level: 25 max edges/level: 52 | |
| 42 mean edges/node: 1.425 mean count/edge: 21 | |
| 43 | |
| 44 Window=1 Iteration=4 | |
| 45 Time for building model: 4 seconds | |
| 46 Time for sampling (singles): 7 seconds | |
| 47 Singles model | |
| 48 mean edges/level: 27 max edges/level: 51 | |
| 49 mean edges/node: 1.393 mean count/edge: 19 | |
| 50 | |
| 51 Window=1 Iteration=5 | |
| 52 Time for building model: 4 seconds | |
| 53 Time for sampling (singles): 5 seconds | |
| 54 Singles model | |
| 55 mean edges/level: 28 max edges/level: 57 | |
| 56 mean edges/node: 1.374 mean count/edge: 18 | |
| 57 | |
| 58 Starting phasing iterations | |
| 59 | |
| 60 Window=1 Iteration=6 | |
| 61 Time for building model: 5 seconds | |
| 62 Time for sampling (singles): 6 seconds | |
| 63 Singles model | |
| 64 mean edges/level: 29 max edges/level: 54 | |
| 65 mean edges/node: 1.349 mean count/edge: 18 | |
| 66 | |
| 67 Window=1 Iteration=7 | |
| 68 Time for building model: 4 seconds | |
| 69 Time for sampling (singles): 7 seconds | |
| 70 Singles model | |
| 71 mean edges/level: 29 max edges/level: 56 | |
| 72 mean edges/node: 1.362 mean count/edge: 18 | |
| 73 | |
| 74 Window=1 Iteration=8 | |
| 75 Time for building model: 5 seconds | |
| 76 Time for sampling (singles): 7 seconds | |
| 77 Singles model | |
| 78 mean edges/level: 29 max edges/level: 51 | |
| 79 mean edges/node: 1.346 mean count/edge: 18 | |
| 80 | |
| 81 Window=1 Iteration=9 | |
| 82 Time for building model: 5 seconds | |
| 83 Time for sampling (singles): 7 seconds | |
| 84 Singles model | |
| 85 mean edges/level: 29 max edges/level: 57 | |
| 86 mean edges/node: 1.352 mean count/edge: 18 | |
| 87 | |
| 88 Window=1 Iteration=10 | |
| 89 Time for building model: 3 seconds | |
| 90 Time for sampling (singles): 6 seconds | |
| 91 Singles model | |
| 92 mean edges/level: 30 max edges/level: 56 | |
| 93 mean edges/node: 1.340 mean count/edge: 17 | |
| 94 | |
| 95 Number of markers: 3094 | |
| 96 Total time for building model: 46 seconds | |
| 97 Total time for sampling: 1 minute 2 seconds | |
| 98 Total run time: 1 minute 53 seconds | |
| 99 | |
| 100 End time: 10:45 AM CEST on 20 Jul 2018 | |
| 101 beagle.jar (r1399) finished |