annotate test-data/filelog.txt @ 0:a929ef8dea25 draft default tip

planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f

beagle.jar (r1399)
Copyright (C) 2014 Brian L. Browning
Enter "java -jar beagle.jar" for a summary of command line arguments.
Start time: 10:43 AM CEST on 20 Jul 2018

Command line: java -Xmx1963m -jar beagle.jar
  gt=/work/GALAXY/galaxy/database/files/071/dataset_71177.dat
  phase-its=5
  impute-its=5
  out=out

reference samples: 0
target samples:    257
  singles: 257
  duos:    0
  trios:   0

Window 1 [ 3:15001183-19992016 ]
target markers:    3094

Starting burn-in iterations

Window=1 Iteration=1
Time for building model:         5 seconds
Time for sampling (singles):     5 seconds
Singles model
mean edges/level: 21     max edges/level: 39
mean edges/node:  1.655  mean count/edge: 24

Window=1 Iteration=2
Time for building model:         4 seconds
Time for sampling (singles):     5 seconds
Singles model
mean edges/level: 23     max edges/level: 46
mean edges/node:  1.513  mean count/edge: 22

Window=1 Iteration=3
Time for building model:         7 seconds
Time for sampling (singles):     6 seconds
Singles model
mean edges/level: 25     max edges/level: 52
mean edges/node:  1.425  mean count/edge: 21

Window=1 Iteration=4
Time for building model:         4 seconds
Time for sampling (singles):     7 seconds
Singles model
mean edges/level: 27     max edges/level: 51
mean edges/node:  1.393  mean count/edge: 19

Window=1 Iteration=5
Time for building model:         4 seconds
Time for sampling (singles):     5 seconds
Singles model
mean edges/level: 28     max edges/level: 57
mean edges/node:  1.374  mean count/edge: 18

Starting phasing iterations

Window=1 Iteration=6
Time for building model:         5 seconds
Time for sampling (singles):     6 seconds
Singles model
mean edges/level: 29     max edges/level: 54
mean edges/node:  1.349  mean count/edge: 18

Window=1 Iteration=7
Time for building model:         4 seconds
Time for sampling (singles):     7 seconds
Singles model
mean edges/level: 29     max edges/level: 56
mean edges/node:  1.362  mean count/edge: 18

Window=1 Iteration=8
Time for building model:         5 seconds
Time for sampling (singles):     7 seconds
Singles model
mean edges/level: 29     max edges/level: 51
mean edges/node:  1.346  mean count/edge: 18

Window=1 Iteration=9
Time for building model:         5 seconds
Time for sampling (singles):     7 seconds
Singles model
mean edges/level: 29     max edges/level: 57
mean edges/node:  1.352  mean count/edge: 18

Window=1 Iteration=10
Time for building model:         3 seconds
Time for sampling (singles):     6 seconds
Singles model
mean edges/level: 30     max edges/level: 56
mean edges/node:  1.340  mean count/edge: 17

Number of markers:             3094
Total time for building model: 46 seconds
Total time for sampling:       1 minute 2 seconds
Total run time:                1 minute 53 seconds

End time: 10:45 AM CEST on 20 Jul 2018
beagle.jar (r1399) finished