Mercurial > repos > dereeper > beagle
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planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f
author | dereeper |
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date | Tue, 14 Aug 2018 07:59:19 -0400 |
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beagle.jar (r1399) Copyright (C) 2014 Brian L. Browning Enter "java -jar beagle.jar" for a summary of command line arguments. Start time: 10:43 AM CEST on 20 Jul 2018 Command line: java -Xmx1963m -jar beagle.jar gt=/work/GALAXY/galaxy/database/files/071/dataset_71177.dat phase-its=5 impute-its=5 out=out reference samples: 0 target samples: 257 singles: 257 duos: 0 trios: 0 Window 1 [ 3:15001183-19992016 ] target markers: 3094 Starting burn-in iterations Window=1 Iteration=1 Time for building model: 5 seconds Time for sampling (singles): 5 seconds Singles model mean edges/level: 21 max edges/level: 39 mean edges/node: 1.655 mean count/edge: 24 Window=1 Iteration=2 Time for building model: 4 seconds Time for sampling (singles): 5 seconds Singles model mean edges/level: 23 max edges/level: 46 mean edges/node: 1.513 mean count/edge: 22 Window=1 Iteration=3 Time for building model: 7 seconds Time for sampling (singles): 6 seconds Singles model mean edges/level: 25 max edges/level: 52 mean edges/node: 1.425 mean count/edge: 21 Window=1 Iteration=4 Time for building model: 4 seconds Time for sampling (singles): 7 seconds Singles model mean edges/level: 27 max edges/level: 51 mean edges/node: 1.393 mean count/edge: 19 Window=1 Iteration=5 Time for building model: 4 seconds Time for sampling (singles): 5 seconds Singles model mean edges/level: 28 max edges/level: 57 mean edges/node: 1.374 mean count/edge: 18 Starting phasing iterations Window=1 Iteration=6 Time for building model: 5 seconds Time for sampling (singles): 6 seconds Singles model mean edges/level: 29 max edges/level: 54 mean edges/node: 1.349 mean count/edge: 18 Window=1 Iteration=7 Time for building model: 4 seconds Time for sampling (singles): 7 seconds Singles model mean edges/level: 29 max edges/level: 56 mean edges/node: 1.362 mean count/edge: 18 Window=1 Iteration=8 Time for building model: 5 seconds Time for sampling (singles): 7 seconds Singles model mean edges/level: 29 max edges/level: 51 mean edges/node: 1.346 mean count/edge: 18 Window=1 Iteration=9 Time for building model: 5 seconds Time for sampling (singles): 7 seconds Singles model mean edges/level: 29 max edges/level: 57 mean edges/node: 1.352 mean count/edge: 18 Window=1 Iteration=10 Time for building model: 3 seconds Time for sampling (singles): 6 seconds Singles model mean edges/level: 30 max edges/level: 56 mean edges/node: 1.340 mean count/edge: 17 Number of markers: 3094 Total time for building model: 46 seconds Total time for sampling: 1 minute 2 seconds Total run time: 1 minute 53 seconds End time: 10:45 AM CEST on 20 Jul 2018 beagle.jar (r1399) finished