Mercurial > repos > devteam > bowtie_color_wrappers

changeset 3:065886169d72 draft

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Uploaded complex repository dependency for bowtie 0.12.7.
author devteam
date Fri, 21 Feb 2014 12:41:19 -0500
parents 393c6829d3c1
children a3825c73805c
files tool_dependencies.xml
diffstat 1 files changed, 1 insertions(+), 25 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Thu Jan 16 12:48:21 2014 -0500
+++ b/tool_dependencies.xml	Fri Feb 21 12:41:19 2014 -0500
@@ -1,30 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
     <package name="bowtie" version="0.12.7">
-        <install version="1.0">
-            <actions>
-                <action type="download_by_url">http://downloads.sourceforge.net/project/bowtie-bio/bowtie/0.12.7/bowtie-0.12.7-src.zip</action>
-                <action type="shell_command">make</action>
-                <action type="move_file">
-                    <source>bowtie</source>
-                    <destination>$INSTALL_DIR/bin</destination>
-                </action>
-                <action type="move_file">
-                    <source>bowtie-build</source>
-                    <destination>$INSTALL_DIR/bin</destination>
-                </action>
-                <action type="move_file">
-                    <source>bowtie-inspect</source>
-                    <destination>$INSTALL_DIR/bin</destination>
-                </action>
-                <action type="set_environment">
-                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
-                </action>
-            </actions>
-        </install>
-        <readme>
-Compiling Bowtie requires libpthread to be present on your system.
-        </readme>
+        <repository changeset_revision="9f9f38617a98" name="package_bowtie_0_12_7" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>
-