Mercurial > repos > devteam > data_manager_gatk_picard_index_builder
changeset 2:700f2df51eb0 draft
planemo upload commit 7d9b478cd03f31705266596fe4c168e719c672b6
| author | devteam |
|---|---|
| date | Fri, 08 May 2015 17:06:38 -0400 |
| parents | a15709ad26ea |
| children | b31f1fcb203c |
| files | data_manager/data_manager_gatk_picard_index_builder.xml tool_dependencies.xml |
| diffstat | 2 files changed, 6 insertions(+), 6 deletions(-) [+] |
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--- a/data_manager/data_manager_gatk_picard_index_builder.xml Mon Sep 15 21:47:46 2014 -0400 +++ b/data_manager/data_manager_gatk_picard_index_builder.xml Fri May 08 17:06:38 2015 -0400 @@ -5,11 +5,11 @@ <requirement type="package" version="1.56.0">picard</requirement> </requirements> <command interpreter="python"> - data_manager_gatk_picard_index_builder.py "${out_file}" \ - --jar "\$JAVA_JAR_PATH/CreateSequenceDictionary.jar" \ - --fasta_filename "${all_fasta_source.fields.path}" \ - --fasta_dbkey "${all_fasta_source.fields.dbkey}" \ - --fasta_description "${all_fasta_source.fields.name}" \ + data_manager_gatk_picard_index_builder.py "${out_file}" + --jar "\$JAVA_JAR_PATH/CreateSequenceDictionary.jar" + --fasta_filename "${all_fasta_source.fields.path}" + --fasta_dbkey "${all_fasta_source.fields.dbkey}" + --fasta_description "${all_fasta_source.fields.name}" --data_table_name "gatk_picard_indexes" </command> <inputs>
--- a/tool_dependencies.xml Mon Sep 15 21:47:46 2014 -0400 +++ b/tool_dependencies.xml Fri May 08 17:06:38 2015 -0400 @@ -1,7 +1,7 @@ <?xml version="1.0"?> <tool_dependency> <package name="picard" version="1.56.0"> - <repository changeset_revision="61e41d21cb6f" name="package_picard_1_56_0" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="99a28567c3a3" name="package_picard_1_56_0" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <package name="samtools" version="0.1.18"> <repository changeset_revision="171cd8bc208d" name="package_samtools_0_1_18" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" />