Mercurial > repos > devteam > fasta_formatter

annotate test-data/fasta_formatter1.fasta @ 0:8f0ae92440b8

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded tool tarball.
author devteam
date Wed, 25 Sep 2013 10:55:39 -0400
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
1 >Scaffold3648
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
2 AGGAATGATGACTACAATGATCAACTTAACCTATCTATTTAATTTAGTTC
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
3 CCTAATGTCAGGGACCTACCTGTTTTTGTTATGTTTGGGTTTTGTTGTTG
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
4 TTGTTTTTTTAATCTGAAGGTATTGTGCATTATATGACCTGTAATACACA
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
5 GTATAACTTTTCAAATACTTTTGTTTTACAACTTTTCTCTCTGGACTTAT
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
6 ATTAAAGTCAATTTTAATGAACATGTAGTAAAAACTAATACATGTACATC
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
7 TACAGTTTATTTATTTTTTTCTTCTTCTTTTTGTATTTCTTGTGTTACAT
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
8 TATTTCACTTCACGTTCATGTTACCAACCTTGCCCCCTTGCTTTCCATGC
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
9 AAAAAAAGAAAAAAAAGAAGCAATACTTACACTTACCCTTGAGATATCTT
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
10 GATCTGAATGCTTTAACATTCTATATGTACAATAAATTTTTGTATCTATA
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
11 GCCTATTATTATATATGTTGCTATGTCAGGCACATTGACAACATTCTCAG
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
12 AAGGTTAGAAGATGGTATTGTTCTGAAATGCCTGGAATGCCTTGTGAACT
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
13 AAGATGATTACTCATGTCATTAAAGTCCCCTAACCCAGGTATTTCCTCCT
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
14 TCCCATGACGAAAACAGTCCATTTAAACTTCACCCCACTTTGGACCCGAA
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
15 AGTGGGGTGCATTTTGGTGGTAAGCTCACCACAGAGCAAGAGAGAGTTAG
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
16 AGTCCCTAATCTGCAGTGTAAACAAACTTTGCCAGGACATCACCAGCCCA
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
17 ACCTTGATAAGTACTGCTTGGAACTCCTCCATGATGTTCTAGTCTTATTC
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
18 GCAGTCTCATATAGGTTCGGATTTTGTCCATTCTCATAGCTACCAGTATA
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
19 CATGGGAGATGCCAGTTTCATCTTCCTTGCTTCACTTTATAAGCATAGTT
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
20 ATATCANGAACTTCCTGGTTATAATTATGTTCCTTTCAAGTTTCATCATA
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
21 ATTGTCTAGTTCGATATAGTACATGGACACAATTAAATATGATATTGTCT
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
22 >Scaffold9299
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
23 CAGCATCTACATAATATGATCGCTATTAAACTTAAATCTCCTTGACGGAG
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
24 TCTTCGGTCATAACACAAACCCAGACCTACGTATATGACAAAGCTAATAG
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
25 GAAAAGCATCCTTGTTTGTTTCACTATGCTTTTTAATGGTTGACGTTAAa
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
26 ggtaaagaccagtattggaaacgccccaatttcaaaaaatgaaatggaag
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
27 ctctcattaccaatcatgtgaaagaatatgttttgactaatacatgatga
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
28 taaaaaaattgccgggaaaccgcctactaattcatatatttagtaaattt
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
29 gtttctctcatggtctgtgagagatatagggtagtcccatatacatcttt
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
30 ctgtgtatagtgcttgtaactttacgaagaatgggccaaatttcttatca
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
31 ttttgatgattccagaaccttgcagatgcgagatggtagatgatcaacct
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
32 tttctgatcgattccataacgtttctttcacaatgcaatcgcatgaccat
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
33 aactggtctttacctTTAAGTTGTAGGTCTTAATTGATAACACTATATAG
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
34 TTTTTTTCTTTTTACTGTTTTTATTAATGACCTCTGTAATTTGCCCTATT
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
35 GTGAAAATACTAAAATATGTTTATACGCCGATGATGCGGCAATATTTTGC
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
36 CAAGGCAAAGAAATTGCCCTTGTTGAGAAAACTCTTAAATGTGAGTTTAA
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
37 AAAAATAGTTGATCACATTGAAAAAGATGACTTAATGTTGAATATCAAGA
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
38 AGTGTAAGATCATGTTATTTGGGACAAGAAAACGAATCAAAAATCAAAGT
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
39 GTACGCTTGATTTACAGAGATAATGTTATCGAAGTTGTAAATGAATTTAA
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
40 ATATCTTGGTGTATTATTTGATAATTATTTAAAGTGGGATATACATATAT
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
41 CGAAAACTGCCTCCAAAATATCTAGAACCATATCATGTATAAAACGAATT
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
42 AAATATTATTTGCCGAAAAGAATTTTAAAATTGTTATATGATAGTTTGAT
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
43 ATTGTCACATATTGACTACGGTATTGTTTTGTGGGGATGTTCAGCAAAGT
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
44 GTCATTTGGAAAAGTTACAAAAGTTACAAAATCGTTATGCCCGTTTAATA
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
45 CTAAACGTAGATATTTTGACACCTCGTATTATATTATTATCCTCTCTAAG
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
46 ATGGCAATCAGTTGTTCAGAGAGTGCAATACCAA
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
47 >Scaffold9309
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
48 GAAGGAAGAAGAGGAAAATAATGATGAATTTGTAGAATTTCTATAACGTA
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
49 TGAAAACATAAACAACATGAAAAAGTATGAACCGACAGAAGAATGAAAAT
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
50 TTCAATCATATAACATGTCATTCACTTCTCTTCTCTGACTGTCAAGTATT
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
51 AGGTATTCCTTTTTATTTCCTCTTAAAATGATCATAGTTTCCTATTTCTT
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
52 TTACACCATTGGGAAGGGAATTCCAATGTTTTATGGCATTGTAATAAAAC
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
53 GAATTTCCAATACTACCTACTCTTTCTGGTAAGTTAAAGTTGAATCGGCT
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
54 ATTTCTTGTATTATAATCATGTACGTCAGTAACAAGATCGAAGTTGGATC
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
55 GAATATAATGATTCGACCTAGTATGATATATTTTATGCACGTGATGCAAT
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
56 ACGAGTTGTTTTGATCTTTGGTCGACTTCAAGAAAACCAGCTTTAGAAAG
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
57 TTCGCTGTAGCCAACATGAGTTCTTGCCTTGGACTAGAACAGTTGATAAA
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
58 TCTCACCATTTTGTTCTTTAAGATGGGTAGAAGAATCCCTGCAATCTAAA
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
59 TGGTCAATTACTGTGAAGTTATTTTTACTGGATGCACCCAATAttttttt
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
60 gataatttttttttctttgataatttttttctttttctttaataaatttt
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
61 ttggataatttttttttggataaatagttcttttttgataattctaataa
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
62 tttttttatttattttttttttttctataattttttttaaaaaatttatt
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
63 aatttttaattaaaaaaaaaataaGAGTTAACAGATTAAGGGAAACTGAC
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
64 AATTCAAAAAAAAAAAAAA
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
65 >Scaffold9310
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
66 GCGGGGGCTGGGGAGGAAGGGGTGGCGTTATTTCACTTCCGATCTAATAC
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
67 GCTTTCTTAAGACACTGAAATATCAGTAGGTATTGGTATAGAGAATTACT
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
68 TTTTATTTTTAATTAAAACATTATCGAAATGAAGATACAGAGAAAAACGA
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
69 TGAGATGTAAGAAGTGCGCGTATTTAtgtgtgtgggtgcgtgtgtgtgtg
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
70 tgtgtgtgtgttgtgtgcgtgcgtgtgtgtggtggtgtgtACTAATTTTG
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
71 ATGTGTGTTGTGGCACAATTGCAATCATCAGTATCTTCATGAAAATGATA
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
72 ACCAGAAGCACAAAAAGGAGGgtgcgtgtgtgtgtgtgtgtgtttagtgt
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
73 gcgtgcgtgtgagggtgtttaagtgtgtatgtCGGAAATGTGGCACAATT
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
74 GCAATCATCTGTATCTTCATGAAAATGATAACCAGAAGAACAAAAAAAAA
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
75 AAACATTGAGAGAACATGTTTTTTTGATGGAAGACAAGAAGTTCTCGTAA
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
76 CGTAGGATCTCCGAGACATGATGGGGTCAACTTAAAAAGAGAGCAGTGAG
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
77 AGGCATTTATATCGAAGGTCAGGGAAAGGCAAACAAAGAAAGAAAAAAAA
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
78 AAGGCTCACAGGAGAACGAAAACACGGGCCAAAATAATAAACAGGAGCAA
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
79 GTGAACGGGCAGTTTGGTAGCTACTTCATTTACCGGCTTTTAAaggtact
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
80 atgtcccatttgcaggtcaaaaaaaatgaaaaagttaaattccaactgca
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
81 tttgaaagataatactaatttacaacttccctaaaaaaggtggggcttga
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
82 aaatgtcttcaagtgcggaaaataacgactattagttgtcaaatcgactt
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
83 tagggCTATAGAGCCCAAAAGTAATAGTCTTGA
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
84 >Scaffold11911
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
85 TTCTTGGCACCCCCCCCCCCCCCACACTCCTGCACTGAAGAACTACTCAA
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
86 GTTTAAACTTTGCATTGCTTTTCTTTCTTTTTCAGTATTTTTTGCTTGGT
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
87 ACATGTTTCTCTTAATATCTGTCGTATAGatttttaatatttttatttat
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
88 atCTACGTCAATCTGGCTGttctttttcttgtcttctttttttttctctc
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
89 tcttttttttcctcgtattttGTATTGATCCTTACCCTAGTTTTTGAACT
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
90 TGAACAGCAATTTGCAGCACTCAAATTTCTTTAAAATTACCTTCTCTTAT
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
91 TTGtctctgttcccctctccccccctctctctctctctctctctctctct
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
92 ctctctctctttcATCTCCCATATCATAATTTGAAGTACCATCTATGGTG
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
93 TTTTCAGATTGATCTTTCTTGCTTTCCCCACCCTCCCCCTTTATGCAGTT
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
94 AATTTTCAGTCTATTTGTGTTTTCTGTGGTTGATTCTAATCATATTCTAA
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
95 CTCTTATTTTACATTTTACTTCACTAACAACTGGTTTATTATATTTGTTA
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
96 CTAATTTTGAATTAAACTATTTACCATTCTGAACGAACTGAAAGATTAAA
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
97 GATCAAACTATCTATGAATAGAATGGTATTTCTTCAATTTATTCAAATTT
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
98 CTCTCTCTTTAACCCCCTTTTTCTGCTTGCATTTTTATCCCTTTGCCGTG
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
99 GACTTCACTGGATATTTTGCTTTGATGCCAATCCAACAATTTTGCATATA
8f0ae92440b8 Uploaded tool tarball.
devteam
parents:
diff changeset
100 TTA