Mercurial > repos > devteam > macs
view test-data/peakcalling_macs/macs_test_2_peaks_out.interval @ 3:e5f3bfba6812 draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/macs commit 206cd8245e7619b0e924c5066d0172129222993d"
| author | devteam |
|---|---|
| date | Wed, 05 Feb 2020 10:28:23 -0500 |
| parents | ae2ec275332a |
| children |
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#peaks file # This file is generated by MACS # ARGUMENTS LIST: # name = Galaxy_Test_Run # format = BED # ChIP-seq file = /galaxy/home/dan/central/database/files/000/dataset_404.dat # control file = /galaxy/home/dan/central/database/files/000/dataset_405.dat # effective genome size = 2.70e+09 # tag size = 36 # band width = 300 # model fold = 13 # pvalue cutoff = 1.00e-05 # Ranges for calculating regional lambda are : peak_region,1000,5000,10000 # unique tags in treatment: 9898 # total tags in treatment: 10000 # unique tags in control: 9896 # total tags in control: 10000 # d = 113 #chr start end length summit tags -10*log10(pvalue) fold_enrichment FDR(%) chr1 3138857 3139271 414 95 6 53.08 35.39 3.55 chr1 4133899 4134700 801 157 27 51.91 9.92 3.70 chr1 4323670 4324367 697 306 49 272.01 29.81 0.00 chr1 4336486 4337946 1460 1216 65 228.35 32.00 0.00 chr1 4407086 4409120 2034 1133 105 300.46 29.27 0.00 chr1 4507832 4508710 878 245 44 161.74 18.90 0.00 chr1 4657704 4658572 868 775 9 280.37 7242.01 0.00 chr1 4658705 4659021 316 110 4 131.25 4828.01 0.00 chr1 4659147 4660581 1434 844 15 463.08 7242.01 0.00 chr1 4661156 4661317 161 81 4 174.88 9656.01 0.00 chr1 4661505 4661617 112 57 2 100.24 4828.01 0.17 chr1 4661790 4662463 673 287 7 219.58 4828.01 0.00 chr1 4662710 4663434 724 623 12 395.94 9656.01 0.00 chr1 4664135 4664430 295 64 5 169.10 7242.01 0.00 chr1 4665001 4665113 112 57 2 100.24 4828.01 0.17 chr1 4665839 4666425 586 475 10 332.40 12070.02 0.00 chr1 4666581 4666693 112 57 2 100.24 4828.01 0.17 chr1 4666840 4666981 141 71 4 174.88 9656.01 0.00 chr1 4667600 4667712 112 57 2 100.24 4828.01 0.17 chr1 4668711 4669005 294 75 5 169.17 7242.01 0.00 chr1 4669126 4669238 112 57 2 100.24 4828.01 0.17 chr1 4669537 4669752 215 108 5 174.88 12070.02 0.00 chr1 4669936 4670048 112 57 2 100.24 4828.01 0.17 chr1 4670216 4670449 233 97 6 212.68 12070.02 0.00 chr1 4673856 4674051 195 98 4 137.07 9656.01 0.00 chr1 4674349 4674478 129 65 3 137.07 7242.01 0.00 chr1 4675027 4675152 125 63 3 137.07 7242.01 0.00 chr1 4676227 4676339 112 57 2 100.24 4828.01 0.17 chr1 4676511 4676623 112 57 2 100.24 4828.01 0.17 chr1 4676954 4677151 197 99 3 100.24 7242.01 0.17 chr1 4677646 4677758 112 57 2 100.24 4828.01 0.17 chr1 4678360 4678472 112 57 2 100.24 4828.01 0.17 chr1 4678659 4679136 477 307 7 230.04 7242.01 0.00 chr1 4679439 4679551 112 57 2 100.24 4828.01 0.17 chr1 4680106 4680523 417 103 5 126.43 4828.01 0.00 chr1 4680822 4680934 112 57 2 100.24 4828.01 0.17 chr1 4681075 4682050 975 104 8 241.81 4828.01 0.00 chr1 4682229 4682387 158 80 3 100.24 7242.01 0.17 chr1 4682594 4682706 112 57 2 100.24 4828.01 0.17 chr1 4683158 4683270 112 57 2 100.24 4828.01 0.17 chr1 4683473 4683585 112 57 2 100.24 4828.01 0.17 chr1 4683832 4683944 112 57 2 100.24 4828.01 0.17 chr1 4684591 4684775 184 93 3 100.24 7242.01 0.17 chr1 4685292 4685404 112 57 2 100.24 4828.01 0.17 chr1 4685810 4686198 388 75 4 127.69 4828.01 0.00 chr1 4686493 4686605 112 57 2 100.24 4828.01 0.17 chr1 4686818 4686930 112 57 2 100.24 4828.01 0.17 chr1 4687387 4687499 112 57 2 100.24 4828.01 0.17 chr1 4687692 4687902 210 106 5 174.88 12070.02 0.00 chr1 4688181 4688790 609 96 8 258.16 9656.01 0.00 chr1 4689101 4689557 456 250 7 231.41 9656.01 0.00 chr1 4690039 4690151 112 57 2 100.24 4828.01 0.17 chr1 4690290 4690402 112 57 2 100.24 4828.01 0.17 chr1 4690780 4690907 127 64 3 137.07 7242.01 0.00 chr1 4691478 4692335 857 509 10 315.89 7242.01 0.00 chr1 4692464 4692768 304 67 4 131.92 7242.01 0.00 chr1 4693243 4693751 508 307 7 228.13 9656.01 0.00 chr1 4694306 4694418 112 57 2 100.24 4828.01 0.17 chr1 4694738 4695016 278 75 5 170.38 9656.01 0.00 chr1 4695207 4695378 171 86 3 100.24 7242.01 0.17 chr1 4695503 4696600 1097 535 12 374.29 7242.01 0.00 chr1 4696903 4697015 112 57 2 100.24 4828.01 0.17 chr1 4697569 4697912 343 106 7 240.07 12070.02 0.00 chr1 4698224 4698395 171 86 3 100.24 7242.01 0.17 chr1 4698790 4698904 114 58 3 137.07 7242.01 0.00 chr1 4699223 4699430 207 104 4 137.07 9656.01 0.00 chr1 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