annotate test-data/blastx_rhodopsin_vs_four_human.xml @ 8:1f546099212f draft

Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
author peterjc
date Tue, 19 Feb 2013 12:49:43 -0500
parents d375502056f1
children 4c4a0da938ff
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1 <?xml version="1.0"?>
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1f546099212f Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
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2 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
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3 <BlastOutput>
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4 <BlastOutput_program>blastx</BlastOutput_program>
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5 <BlastOutput_version>BLASTX 2.2.26+</BlastOutput_version>
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6 <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&amp;auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), &quot;Gapped BLAST and PSI-BLAST: a new generation of protein database search programs&quot;, Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference>
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7 <BlastOutput_db></BlastOutput_db>
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8 <BlastOutput_query-ID>Query_1</BlastOutput_query-ID>
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9 <BlastOutput_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</BlastOutput_query-def>
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10 <BlastOutput_query-len>1047</BlastOutput_query-len>
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11 <BlastOutput_param>
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12 <Parameters>
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13 <Parameters_matrix>BLOSUM62</Parameters_matrix>
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14 <Parameters_expect>1e-10</Parameters_expect>
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15 <Parameters_gap-open>11</Parameters_gap-open>
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16 <Parameters_gap-extend>1</Parameters_gap-extend>
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17 <Parameters_filter>L;</Parameters_filter>
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18 </Parameters>
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19 </BlastOutput_param>
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20 <BlastOutput_iterations>
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21 <Iteration>
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22 <Iteration_iter-num>1</Iteration_iter-num>
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23 <Iteration_query-ID>Query_1</Iteration_query-ID>
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24 <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def>
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25 <Iteration_query-len>1047</Iteration_query-len>
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26 <Iteration_hits></Iteration_hits>
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27 <Iteration_stat>
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28 <Statistics>
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29 <Statistics_db-num>0</Statistics_db-num>
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30 <Statistics_db-len>0</Statistics_db-len>
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31 <Statistics_hsp-len>29</Statistics_hsp-len>
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32 <Statistics_eff-space>102080</Statistics_eff-space>
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33 <Statistics_kappa>0.041</Statistics_kappa>
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34 <Statistics_lambda>0.267</Statistics_lambda>
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35 <Statistics_entropy>0.14</Statistics_entropy>
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36 </Statistics>
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37 </Iteration_stat>
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38 <Iteration_message>No hits found</Iteration_message>
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39 </Iteration>
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40 <Iteration>
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41 <Iteration_iter-num>2</Iteration_iter-num>
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42 <Iteration_query-ID>Query_1</Iteration_query-ID>
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43 <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def>
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44 <Iteration_query-len>1047</Iteration_query-len>
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45 <Iteration_hits></Iteration_hits>
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46 <Iteration_stat>
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47 <Statistics>
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48 <Statistics_db-num>0</Statistics_db-num>
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49 <Statistics_db-len>0</Statistics_db-len>
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50 <Statistics_hsp-len>29</Statistics_hsp-len>
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51 <Statistics_eff-space>102080</Statistics_eff-space>
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52 <Statistics_kappa>0.041</Statistics_kappa>
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53 <Statistics_lambda>0.267</Statistics_lambda>
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54 <Statistics_entropy>0.14</Statistics_entropy>
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55 </Statistics>
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56 </Iteration_stat>
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57 <Iteration_message>No hits found</Iteration_message>
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58 </Iteration>
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59 <Iteration>
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60 <Iteration_iter-num>3</Iteration_iter-num>
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61 <Iteration_query-ID>Query_1</Iteration_query-ID>
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62 <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def>
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63 <Iteration_query-len>1047</Iteration_query-len>
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64 <Iteration_hits></Iteration_hits>
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65 <Iteration_stat>
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66 <Statistics>
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67 <Statistics_db-num>0</Statistics_db-num>
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68 <Statistics_db-len>0</Statistics_db-len>
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69 <Statistics_hsp-len>29</Statistics_hsp-len>
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70 <Statistics_eff-space>102080</Statistics_eff-space>
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71 <Statistics_kappa>0.041</Statistics_kappa>
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72 <Statistics_lambda>0.267</Statistics_lambda>
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73 <Statistics_entropy>0.14</Statistics_entropy>
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74 </Statistics>
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75 </Iteration_stat>
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76 <Iteration_message>No hits found</Iteration_message>
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77 </Iteration>
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78 <Iteration>
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79 <Iteration_iter-num>4</Iteration_iter-num>
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80 <Iteration_query-ID>Query_1</Iteration_query-ID>
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81 <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def>
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82 <Iteration_query-len>1047</Iteration_query-len>
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83 <Iteration_hits>
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84 <Hit>
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85 <Hit_num>1</Hit_num>
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86 <Hit_id>Subject_4</Hit_id>
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87 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def>
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88 <Hit_accession>Subject_4</Hit_accession>
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89 <Hit_len>348</Hit_len>
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90 <Hit_hsps>
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91 <Hsp>
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92 <Hsp_num>1</Hsp_num>
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93 <Hsp_bit-score>662.144</Hsp_bit-score>
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94 <Hsp_score>1707</Hsp_score>
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95 <Hsp_evalue>0</Hsp_evalue>
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96 <Hsp_query-from>1</Hsp_query-from>
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97 <Hsp_query-to>1044</Hsp_query-to>
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98 <Hsp_hit-from>1</Hsp_hit-from>
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99 <Hsp_hit-to>348</Hsp_hit-to>
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100 <Hsp_query-frame>1</Hsp_query-frame>
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101 <Hsp_hit-frame>0</Hsp_hit-frame>
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102 <Hsp_identity>336</Hsp_identity>
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103 <Hsp_positive>343</Hsp_positive>
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104 <Hsp_gaps>0</Hsp_gaps>
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105 <Hsp_align-len>348</Hsp_align-len>
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106 <Hsp_qseq>MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA</Hsp_qseq>
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107 <Hsp_hseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_hseq>
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108 <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T SKTETSQVAPA</Hsp_midline>
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109 </Hsp>
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110 </Hit_hsps>
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111 </Hit>
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112 </Iteration_hits>
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113 <Iteration_stat>
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114 <Statistics>
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115 <Statistics_db-num>0</Statistics_db-num>
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116 <Statistics_db-len>0</Statistics_db-len>
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117 <Statistics_hsp-len>29</Statistics_hsp-len>
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118 <Statistics_eff-space>102080</Statistics_eff-space>
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119 <Statistics_kappa>0.041</Statistics_kappa>
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120 <Statistics_lambda>0.267</Statistics_lambda>
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121 <Statistics_entropy>0.14</Statistics_entropy>
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122 </Statistics>
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123 </Iteration_stat>
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124 </Iteration>
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125 <Iteration>
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126 <Iteration_iter-num>5</Iteration_iter-num>
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127 <Iteration_query-ID>Query_2</Iteration_query-ID>
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128 <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def>
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129 <Iteration_query-len>1574</Iteration_query-len>
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130 <Iteration_hits></Iteration_hits>
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131 <Iteration_stat>
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132 <Statistics>
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133 <Statistics_db-num>0</Statistics_db-num>
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134 <Statistics_db-len>0</Statistics_db-len>
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135 <Statistics_hsp-len>32</Statistics_hsp-len>
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136 <Statistics_eff-space>155472</Statistics_eff-space>
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137 <Statistics_kappa>0.041</Statistics_kappa>
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138 <Statistics_lambda>0.267</Statistics_lambda>
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139 <Statistics_entropy>0.14</Statistics_entropy>
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140 </Statistics>
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141 </Iteration_stat>
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142 <Iteration_message>No hits found</Iteration_message>
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143 </Iteration>
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144 <Iteration>
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145 <Iteration_iter-num>6</Iteration_iter-num>
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146 <Iteration_query-ID>Query_2</Iteration_query-ID>
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147 <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def>
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148 <Iteration_query-len>1574</Iteration_query-len>
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149 <Iteration_hits></Iteration_hits>
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150 <Iteration_stat>
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151 <Statistics>
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154 <Statistics_hsp-len>32</Statistics_hsp-len>
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155 <Statistics_eff-space>155472</Statistics_eff-space>
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156 <Statistics_kappa>0.041</Statistics_kappa>
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157 <Statistics_lambda>0.267</Statistics_lambda>
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158 <Statistics_entropy>0.14</Statistics_entropy>
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159 </Statistics>
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160 </Iteration_stat>
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161 <Iteration_message>No hits found</Iteration_message>
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162 </Iteration>
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163 <Iteration>
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164 <Iteration_iter-num>7</Iteration_iter-num>
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165 <Iteration_query-ID>Query_2</Iteration_query-ID>
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166 <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def>
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167 <Iteration_query-len>1574</Iteration_query-len>
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168 <Iteration_hits></Iteration_hits>
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169 <Iteration_stat>
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170 <Statistics>
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171 <Statistics_db-num>0</Statistics_db-num>
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172 <Statistics_db-len>0</Statistics_db-len>
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diff changeset
173 <Statistics_hsp-len>32</Statistics_hsp-len>
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diff changeset
174 <Statistics_eff-space>155472</Statistics_eff-space>
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diff changeset
175 <Statistics_kappa>0.041</Statistics_kappa>
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diff changeset
176 <Statistics_lambda>0.267</Statistics_lambda>
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diff changeset
177 <Statistics_entropy>0.14</Statistics_entropy>
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diff changeset
178 </Statistics>
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diff changeset
179 </Iteration_stat>
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diff changeset
180 <Iteration_message>No hits found</Iteration_message>
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diff changeset
181 </Iteration>
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devteam
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diff changeset
182 <Iteration>
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devteam
parents:
diff changeset
183 <Iteration_iter-num>8</Iteration_iter-num>
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devteam
parents:
diff changeset
184 <Iteration_query-ID>Query_2</Iteration_query-ID>
d375502056f1 Uploaded
devteam
parents:
diff changeset
185 <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def>
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devteam
parents:
diff changeset
186 <Iteration_query-len>1574</Iteration_query-len>
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diff changeset
187 <Iteration_hits>
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parents:
diff changeset
188 <Hit>
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diff changeset
189 <Hit_num>1</Hit_num>
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diff changeset
190 <Hit_id>Subject_4</Hit_id>
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devteam
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diff changeset
191 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def>
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diff changeset
192 <Hit_accession>Subject_4</Hit_accession>
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diff changeset
193 <Hit_len>348</Hit_len>
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diff changeset
194 <Hit_hsps>
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parents:
diff changeset
195 <Hsp>
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devteam
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diff changeset
196 <Hsp_num>1</Hsp_num>
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1f546099212f Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
peterjc
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diff changeset
197 <Hsp_bit-score>575.089</Hsp_bit-score>
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devteam
parents:
diff changeset
198 <Hsp_score>1481</Hsp_score>
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1f546099212f Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
peterjc
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diff changeset
199 <Hsp_evalue>0</Hsp_evalue>
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d375502056f1 Uploaded
devteam
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diff changeset
200 <Hsp_query-from>42</Hsp_query-from>
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diff changeset
201 <Hsp_query-to>1037</Hsp_query-to>
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parents:
diff changeset
202 <Hsp_hit-from>1</Hsp_hit-from>
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parents:
diff changeset
203 <Hsp_hit-to>332</Hsp_hit-to>
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diff changeset
204 <Hsp_query-frame>3</Hsp_query-frame>
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diff changeset
205 <Hsp_hit-frame>0</Hsp_hit-frame>
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parents:
diff changeset
206 <Hsp_identity>283</Hsp_identity>
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parents:
diff changeset
207 <Hsp_positive>315</Hsp_positive>
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diff changeset
208 <Hsp_gaps>0</Hsp_gaps>
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parents:
diff changeset
209 <Hsp_align-len>332</Hsp_align-len>
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devteam
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diff changeset
210 <Hsp_qseq>MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDD</Hsp_qseq>
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devteam
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211 <Hsp_hseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDE</Hsp_hseq>
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212 <Hsp_midline>MNGTEGPNFY+P SN TGVVRSPFEYPQYYLAEPWQ+S+L AYMFLLI+LGFPINF+TLYVT+QHKKLRTPLNYILLNLA A+ FMVL GFT T+Y+S++GYF+ G TGC +EGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF ENHA+MGVAFTW+MAL+CA PPL GWSRYIPEG+QCSCG+DYYTLKPEVNNESFVIYMFVVHFTIP+IIIFFCYG+LV TVKEAAAQQQESATTQKAEKEVTRMVIIMV+ FLICWVPYASVAF+IF++QGS FGPIFMT+PAFFAKS++IYNPVIYIM+NKQFRNCM+TT+CCGKNP G+D+</Hsp_midline>
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devteam
parents:
diff changeset
213 </Hsp>
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diff changeset
214 </Hit_hsps>
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diff changeset
215 </Hit>
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218 <Statistics>
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219 <Statistics_db-num>0</Statistics_db-num>
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220 <Statistics_db-len>0</Statistics_db-len>
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221 <Statistics_hsp-len>32</Statistics_hsp-len>
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diff changeset
222 <Statistics_eff-space>155472</Statistics_eff-space>
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parents:
diff changeset
223 <Statistics_kappa>0.041</Statistics_kappa>
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parents:
diff changeset
224 <Statistics_lambda>0.267</Statistics_lambda>
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parents:
diff changeset
225 <Statistics_entropy>0.14</Statistics_entropy>
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diff changeset
226 </Statistics>
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227 </Iteration_stat>
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diff changeset
228 </Iteration>
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diff changeset
229 <Iteration>
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diff changeset
230 <Iteration_iter-num>9</Iteration_iter-num>
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diff changeset
231 <Iteration_query-ID>Query_3</Iteration_query-ID>
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parents:
diff changeset
232 <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def>
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233 <Iteration_query-len>4301</Iteration_query-len>
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234 <Iteration_hits></Iteration_hits>
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235 <Iteration_stat>
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236 <Statistics>
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238 <Statistics_db-len>0</Statistics_db-len>
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239 <Statistics_hsp-len>39</Statistics_hsp-len>
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240 <Statistics_eff-space>430746</Statistics_eff-space>
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241 <Statistics_kappa>0.041</Statistics_kappa>
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242 <Statistics_lambda>0.267</Statistics_lambda>
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diff changeset
243 <Statistics_entropy>0.14</Statistics_entropy>
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244 </Statistics>
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diff changeset
245 </Iteration_stat>
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parents:
diff changeset
246 <Iteration_message>No hits found</Iteration_message>
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diff changeset
247 </Iteration>
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parents:
diff changeset
248 <Iteration>
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parents:
diff changeset
249 <Iteration_iter-num>10</Iteration_iter-num>
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parents:
diff changeset
250 <Iteration_query-ID>Query_3</Iteration_query-ID>
d375502056f1 Uploaded
devteam
parents:
diff changeset
251 <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def>
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devteam
parents:
diff changeset
252 <Iteration_query-len>4301</Iteration_query-len>
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253 <Iteration_hits></Iteration_hits>
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254 <Iteration_stat>
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devteam
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diff changeset
255 <Statistics>
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diff changeset
256 <Statistics_db-num>0</Statistics_db-num>
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257 <Statistics_db-len>0</Statistics_db-len>
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parents:
diff changeset
258 <Statistics_hsp-len>39</Statistics_hsp-len>
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259 <Statistics_eff-space>430746</Statistics_eff-space>
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diff changeset
260 <Statistics_kappa>0.041</Statistics_kappa>
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diff changeset
261 <Statistics_lambda>0.267</Statistics_lambda>
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diff changeset
262 <Statistics_entropy>0.14</Statistics_entropy>
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diff changeset
263 </Statistics>
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parents:
diff changeset
264 </Iteration_stat>
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devteam
parents:
diff changeset
265 <Iteration_message>No hits found</Iteration_message>
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diff changeset
266 </Iteration>
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devteam
parents:
diff changeset
267 <Iteration>
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parents:
diff changeset
268 <Iteration_iter-num>11</Iteration_iter-num>
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devteam
parents:
diff changeset
269 <Iteration_query-ID>Query_3</Iteration_query-ID>
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devteam
parents:
diff changeset
270 <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def>
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devteam
parents:
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271 <Iteration_query-len>4301</Iteration_query-len>
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diff changeset
272 <Iteration_hits></Iteration_hits>
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273 <Iteration_stat>
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diff changeset
274 <Statistics>
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diff changeset
275 <Statistics_db-num>0</Statistics_db-num>
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276 <Statistics_db-len>0</Statistics_db-len>
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diff changeset
277 <Statistics_hsp-len>39</Statistics_hsp-len>
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278 <Statistics_eff-space>430746</Statistics_eff-space>
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parents:
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279 <Statistics_kappa>0.041</Statistics_kappa>
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diff changeset
280 <Statistics_lambda>0.267</Statistics_lambda>
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281 <Statistics_entropy>0.14</Statistics_entropy>
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282 </Statistics>
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devteam
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283 </Iteration_stat>
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devteam
parents:
diff changeset
284 <Iteration_message>No hits found</Iteration_message>
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devteam
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285 </Iteration>
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diff changeset
286 <Iteration>
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parents:
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287 <Iteration_iter-num>12</Iteration_iter-num>
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devteam
parents:
diff changeset
288 <Iteration_query-ID>Query_3</Iteration_query-ID>
d375502056f1 Uploaded
devteam
parents:
diff changeset
289 <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def>
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parents:
diff changeset
290 <Iteration_query-len>4301</Iteration_query-len>
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291 <Iteration_hits>
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292 <Hit>
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diff changeset
293 <Hit_num>1</Hit_num>
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parents:
diff changeset
294 <Hit_id>Subject_4</Hit_id>
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devteam
parents:
diff changeset
295 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def>
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devteam
parents:
diff changeset
296 <Hit_accession>Subject_4</Hit_accession>
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parents:
diff changeset
297 <Hit_len>348</Hit_len>
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298 <Hit_hsps>
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diff changeset
299 <Hsp>
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devteam
parents:
diff changeset
300 <Hsp_num>1</Hsp_num>
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1f546099212f Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
peterjc
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diff changeset
301 <Hsp_bit-score>224.172</Hsp_bit-score>
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d375502056f1 Uploaded
devteam
parents:
diff changeset
302 <Hsp_score>570</Hsp_score>
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1f546099212f Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
peterjc
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diff changeset
303 <Hsp_evalue>1.84906e-68</Hsp_evalue>
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devteam
parents:
diff changeset
304 <Hsp_query-from>1</Hsp_query-from>
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parents:
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307 <Hsp_hit-to>121</Hsp_hit-to>
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diff changeset
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parents:
diff changeset
310 <Hsp_identity>107</Hsp_identity>
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parents:
diff changeset
311 <Hsp_positive>109</Hsp_positive>
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parents:
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312 <Hsp_gaps>0</Hsp_gaps>
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devteam
parents:
diff changeset
313 <Hsp_align-len>111</Hsp_align-len>
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devteam
parents:
diff changeset
314 <Hsp_qseq>VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_qseq>
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devteam
parents:
diff changeset
315 <Hsp_hseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_hseq>
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devteam
parents:
diff changeset
316 <Hsp_midline>VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_midline>
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devteam
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317 </Hsp>
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devteam
parents:
diff changeset
318 <Hsp>
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devteam
parents:
diff changeset
319 <Hsp_num>2</Hsp_num>
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1f546099212f Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
peterjc
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diff changeset
320 <Hsp_bit-score>129.413</Hsp_bit-score>
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devteam
parents:
diff changeset
321 <Hsp_score>324</Hsp_score>
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1f546099212f Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
peterjc
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diff changeset
322 <Hsp_evalue>4.62305e-36</Hsp_evalue>
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devteam
parents:
diff changeset
323 <Hsp_query-from>3174</Hsp_query-from>
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325 <Hsp_hit-from>248</Hsp_hit-from>
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parents:
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326 <Hsp_hit-to>312</Hsp_hit-to>
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327 <Hsp_query-frame>3</Hsp_query-frame>
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parents:
diff changeset
328 <Hsp_hit-frame>0</Hsp_hit-frame>
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devteam
parents:
diff changeset
329 <Hsp_identity>60</Hsp_identity>
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devteam
parents:
diff changeset
330 <Hsp_positive>64</Hsp_positive>
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devteam
parents:
diff changeset
331 <Hsp_gaps>0</Hsp_gaps>
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devteam
parents:
diff changeset
332 <Hsp_align-len>65</Hsp_align-len>
d375502056f1 Uploaded
devteam
parents:
diff changeset
333 <Hsp_qseq>KEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQ</Hsp_qseq>
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devteam
parents:
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334 <Hsp_hseq>KEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQ</Hsp_hseq>
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devteam
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335 <Hsp_midline>KEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQ</Hsp_midline>
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devteam
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336 </Hsp>
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devteam
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diff changeset
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1f546099212f Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
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peterjc
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parents:
diff changeset
683 <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def>
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684 <Hit_accession>Subject_4</Hit_accession>
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685 <Hit_len>348</Hit_len>
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686 <Hit_hsps>
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687 <Hsp>
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688 <Hsp_num>1</Hsp_num>
8
1f546099212f Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
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689 <Hsp_bit-score>559.296</Hsp_bit-score>
0
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690 <Hsp_score>1440</Hsp_score>
8
1f546099212f Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
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691 <Hsp_evalue>0</Hsp_evalue>
0
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692 <Hsp_query-from>23</Hsp_query-from>
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693 <Hsp_query-to>1018</Hsp_query-to>
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694 <Hsp_hit-from>1</Hsp_hit-from>
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695 <Hsp_hit-to>332</Hsp_hit-to>
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696 <Hsp_query-frame>2</Hsp_query-frame>
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697 <Hsp_hit-frame>0</Hsp_hit-frame>
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698 <Hsp_identity>272</Hsp_identity>
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699 <Hsp_positive>307</Hsp_positive>
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700 <Hsp_gaps>0</Hsp_gaps>
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701 <Hsp_align-len>332</Hsp_align-len>
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702 <Hsp_qseq>MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKXXXXXXXXXXXXXXXXXXVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEED</Hsp_qseq>
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703 <Hsp_hseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDE</Hsp_hseq>
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704 <Hsp_midline>MNGTEGPNFY+P SNATGVVRSPFEYPQYYLAEPW FS L+AYMF LI+ GFPINFLTLYVT++HKKLRTPLNYILLNLAVADLFMV GGFT+T+YTS+HGYFVFGPTGCN+EGFFATLGGEIALW LVVLAIER++VVCKP++NFRFGE+HAIMGV TW MALACA PPL GWSRYIPEGLQCSCGIDYYT P +NNESFVIYMF HF+IP+ +I FCYG+LV TVKEAAAQQQES TTQ+AE+EVTRMV+IMVI+FL+CWVPYASVA+YIFTHQGS FGPIFMTIP+FFAKS+A+YNP+IYI MNKQFR+CM+TT+CCGKNP +++</Hsp_midline>
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705 </Hsp>
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706 </Hit_hsps>
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707 </Hit>
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708 </Iteration_hits>
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709 <Iteration_stat>
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710 <Statistics>
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711 <Statistics_db-num>0</Statistics_db-num>
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712 <Statistics_db-len>0</Statistics_db-len>
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713 <Statistics_hsp-len>31</Statistics_hsp-len>
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714 <Statistics_eff-space>132189</Statistics_eff-space>
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715 <Statistics_kappa>0.041</Statistics_kappa>
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716 <Statistics_lambda>0.267</Statistics_lambda>
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717 <Statistics_entropy>0.14</Statistics_entropy>
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718 </Statistics>
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719 </Iteration_stat>
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720 </Iteration>
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721 </BlastOutput_iterations>
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722 </BlastOutput>