Mercurial > repos > devteam > vcfgeno2haplo
changeset 1:401f29f278f0 draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfgeno2haplo commit a1517c9d22029095120643bbe2c8fa53754dd2b7
| author | devteam |
|---|---|
| date | Wed, 11 Nov 2015 13:00:04 -0500 |
| parents | 2bdb74ab3270 |
| children | 5bd9783e982a |
| files | tool-data/tool_data_table_conf.xml.sample vcfgeno2haplo.xml |
| diffstat | 2 files changed, 2 insertions(+), 2 deletions(-) [+] |
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--- a/tool-data/tool_data_table_conf.xml.sample Thu Mar 19 14:32:31 2015 -0400 +++ b/tool-data/tool_data_table_conf.xml.sample Wed Nov 11 13:00:04 2015 -0500 @@ -2,7 +2,7 @@ <tables> <!-- Location of SAMTools indexes and other files --> <table name="fasta_indexes" comment_char="#"> - <columns>line_type, value, path</columns> + <columns>value, dbkey, name, path</columns> <file path="tool-data/fasta_indexes.loc" /> </table> </tables>
--- a/vcfgeno2haplo.xml Thu Mar 19 14:32:31 2015 -0400 +++ b/vcfgeno2haplo.xml Wed Nov 11 13:00:04 2015 -0500 @@ -38,7 +38,7 @@ <param name="input_vcf" type="data" format="vcf" label="Select VCF dataset" /> </when> </conditional> - <param name="window_size" type="text" size="4" value="30" label="compare records up to this many bp away" help="--window-size option (default = 30)" /> + <param name="window_size" type="text" value="30" label="compare records up to this many bp away" help="--window-size option (default = 30)" /> <param name="output_option" type="boolean" truevalue="-o" falsevalue="" label="What to report?" help="--only-variants option" /> <!-- <option value=" ">Output entire haplotype</option> <option value="-o">Don't output the entire haplotype, just concatenate REF/ALT strings (delimited by ":")</option>