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1 <tool id="rtg_genomesim" name="Simulate a genome">
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2 <description>with rtg genomesim</description>
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3 <command interpreter="bash">galaxy-rtg-wrapper.sh genomesim
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4 --min-length $minlength --max-length $maxlength -n $numseqs --seed $seed
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5 -o ${output.extra_files_path} >$output</command>
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6 <inputs>
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7 <param name="minlength" type="integer" value="20000" label="Minimum contig length"/>
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8 <param name="maxlength" type="integer" value="100000" label="Maximum contig length"/>
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9 <param name="numseqs" type="integer" value="10" label="Number of contigs"/>
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10 <param name="seed" type="integer" value="42" label="Seed" help="Seed for the random number generator"/>
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11 </inputs>
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12 <outputs>
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13 <data format="rtg_sdf" name="output" />
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14 </outputs>
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15
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16 <help>
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17 This tool creates an SDF containing randomly generated contigs representing a genome.
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18 </help>
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19
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20 </tool>
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