Mercurial > repos > diego > rtg_investigator
diff tools/rtg/genomesim.xml @ 1:8593828f91e7 default tip
Full galaxy wrapper
| author | diego |
|---|---|
| date | Sat, 21 Apr 2012 21:36:15 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tools/rtg/genomesim.xml Sat Apr 21 21:36:15 2012 -0400 @@ -0,0 +1,20 @@ +<tool id="rtg_genomesim" name="Simulate a genome"> + <description>with rtg genomesim</description> + <command interpreter="bash">galaxy-rtg-wrapper.sh genomesim +--min-length $minlength --max-length $maxlength -n $numseqs --seed $seed +-o ${output.extra_files_path} >$output</command> + <inputs> + <param name="minlength" type="integer" value="20000" label="Minimum contig length"/> + <param name="maxlength" type="integer" value="100000" label="Maximum contig length"/> + <param name="numseqs" type="integer" value="10" label="Number of contigs"/> + <param name="seed" type="integer" value="42" label="Seed" help="Seed for the random number generator"/> + </inputs> + <outputs> + <data format="rtg_sdf" name="output" /> + </outputs> + + <help> +This tool creates an SDF containing randomly generated contigs representing a genome. + </help> + +</tool>