diff tools/rtg/genomesim.xml @ 1:8593828f91e7 default tip

Full galaxy wrapper
author diego
date Sat, 21 Apr 2012 21:36:15 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tools/rtg/genomesim.xml	Sat Apr 21 21:36:15 2012 -0400
@@ -0,0 +1,20 @@
+<tool id="rtg_genomesim" name="Simulate a genome">
+  <description>with rtg genomesim</description>
+  <command interpreter="bash">galaxy-rtg-wrapper.sh genomesim
+--min-length $minlength --max-length $maxlength -n $numseqs --seed $seed
+-o ${output.extra_files_path} >$output</command>
+  <inputs>
+    <param name="minlength" type="integer" value="20000" label="Minimum contig length"/>
+    <param name="maxlength" type="integer" value="100000" label="Maximum contig length"/>
+    <param name="numseqs" type="integer" value="10" label="Number of contigs"/>
+    <param name="seed" type="integer" value="42" label="Seed" help="Seed for the random number generator"/>
+  </inputs>
+  <outputs>
+    <data format="rtg_sdf" name="output" />
+  </outputs>
+
+  <help>
+This tool creates an SDF containing randomly generated contigs representing a genome.
+  </help>
+
+</tool>